View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4040_low_2 (Length: 538)
Name: NF4040_low_2
Description: NF4040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4040_low_2 |
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| [»] scaffold0427 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 244 - 519
Target Start/End: Complemental strand, 46568997 - 46568721
Alignment:
| Q |
244 |
attagggttgagttttcccattcaaagctgaaaagatgtttcaacgtagtagatgttgtgaaactttgaataccatgttaaagttacaaattggcaatac |
343 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
46568997 |
attagggttgagttttcccattcaaagctgaaaagatgtttcaacgtagtagatgttgtgagactttgaataccatgttaaagttacaaattggcaatac |
46568898 |
T |
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| Q |
344 |
caattcactacgtcataataatagtagtaacaacc-tgcatgtgtagcaaaaacataatccaggcaaggtttacaatacattccagaaaaatatgagagt |
442 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
46568897 |
caattcactacgtcataataatagtagtaacaaccatgcatgtgtagcaaaaacataatccaggcaaggtttacaatacattccagaaaaatattagagt |
46568798 |
T |
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| Q |
443 |
tggcaaggtaggtgtgtaagtaaagtatcacgtgttgttactcaatcaggacaacccattgattatcttgtgcttgt |
519 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46568797 |
tggcaaggtaggtgtgtaagtaaagtatcacgtgttgttactcaatcaggacaacccattgattatcttgtgcttgt |
46568721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0427 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: scaffold0427
Description:
Target: scaffold0427; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 7111 - 6868
Alignment:
| Q |
1 |
aagataaatcaaagaaagcgggaatgggataaatttggaaaagtagttggggaatggtagaagaaaacacaggaa-caggaaaggaactcagcagcaaga |
99 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
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| T |
7111 |
aagataaatcaaagaaagcgagaatgggataaatttggaaaagtagttggggaatggtagaagaaaacacaggaaacaggaaaggaactcagtagcaaga |
7012 |
T |
|
| Q |
100 |
agagagaaagttaggggagagagaaagggaatgtataaagtgttggtggtgcatcataatatttgtggaacctcacaatctaaccatacattaaacttgc |
199 |
Q |
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|||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7011 |
agagagaaagctaggggagagagaaagggaatgtataaattgatggtggtgcatcataatatttgtggaacctcacaatctaaccatacattaaacttgc |
6912 |
T |
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| Q |
200 |
tcagggtgggagacctatcaaactctcccaccctagactgagcc |
243 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
6911 |
tcacggtgggagacctatcaaactctcccaccctagactgagcc |
6868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0427; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 145 - 237
Target Start/End: Original strand, 7910 - 8002
Alignment:
| Q |
145 |
gtggtgcatcataatatttgtggaacctcacaatctaaccatacattaaacttgctcagggtgggagacctatcaaactctcccaccctagac |
237 |
Q |
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|||||||||||||| ||||||||||| ||| ||||||||| ||||| ||||| | | |||||||||||||||| ||| |||| ||||||| |
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| T |
7910 |
gtggtgcatcataacatttgtggaacatcataatctaaccgtacatcaaactcacctacggtgggagacctatcaggctcacccatcctagac |
8002 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 4296859 - 4297100
Alignment:
| Q |
1 |
aagataaatcaaagaaagcgggaatgggataaatttggaaaagtagttggggaatggtagaagaaaacacaggaa-caggaaaggaactcagcagcaaga |
99 |
Q |
| |
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|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||| |
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| T |
4296859 |
aagataaatcaaagaaagcgagaatgggataagtttggaaaagtagttggggaatggtagaagaaaacacaagaaacaggaaaggaactcagtagcaaga |
4296958 |
T |
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| Q |
100 |
agagagaaagttaggggagagagaaagggaatgtataaagtgttggtggtgcatcataatatttgtggaacctcacaatctaaccatacattaaacttgc |
199 |
Q |
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||||||| ||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4296959 |
---gagaaagctaggggagagagagagggaatgtataaattgatggtggtgcatcataatatttgtggaacctcacaatctaaccatacattaaacttgc |
4297055 |
T |
|
| Q |
200 |
tcagggtgggagacctatcaaactctcccaccctagactgagcca |
244 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
4297056 |
tcacggtgggagacctatcaaactctcccaccctagactgagcca |
4297100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 145 - 237
Target Start/End: Complemental strand, 4296044 - 4295952
Alignment:
| Q |
145 |
gtggtgcatcataatatttgtggaacctcacaatctaaccatacattaaacttgctcagggtgggagacctatcaaactctcccaccctagac |
237 |
Q |
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|||||||||||||| ||||||||||| ||| ||||||||| ||||| ||||| | | |||||||||||||||| ||| |||||||||||| |
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| T |
4296044 |
gtggtgcatcataacatttgtggaacatcataatctaaccgtacatcaaactcacctacggtgggagacctatcaggctcacccaccctagac |
4295952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 182; Significance: 4e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 3385489 - 3385248
Alignment:
| Q |
1 |
aagataaatcaaagaaagcgggaatgggataaatttggaaaagtagttggggaatggtagaagaaaacacaggaa-caggaaaggaactcagcagcaaga |
99 |
Q |
| |
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|||||||||| ||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
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| T |
3385489 |
aagataaatcgaagaaagcgagaatgagataaatttaaaaaagtagttggggaatggtagaagaaaacacaggaaacaggaaaggaactcagtagcaaga |
3385390 |
T |
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| Q |
100 |
agagagaaagttagggg-agagagaaagggaatgtataaagtgttggtggtgcatcataatatttgtggaacctcacaatctaaccatacattaaacttg |
198 |
Q |
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|||||||||| |||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3385389 |
agagagaaagctagggggagagagaaagggaatgtataaattgatggtggtgcatcataatatttgtggaacctcacaatctaaccatacattaaacttg |
3385290 |
T |
|
| Q |
199 |
ctcagggtgggagacctatcaaactctcccaccctagactga |
240 |
Q |
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|||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
3385289 |
ctcatggtggaagacctatcaaactctcccaccctagactga |
3385248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 100 - 169
Target Start/End: Original strand, 9738633 - 9738702
Alignment:
| Q |
100 |
agagagaaagttaggggagagagaaagggaatgtataaagtgttggtggtgcatcataatatttgtggaa |
169 |
Q |
| |
|
|||||||||| |||| ||||| ||| | |||||||| ||||||||||||||||||||||||||||||| |
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| T |
9738633 |
agagagaaaggtaggatagagaaaaaaagcatgtataaggtgttggtggtgcatcataatatttgtggaa |
9738702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 205 - 243
Target Start/End: Complemental strand, 9034036 - 9033998
Alignment:
| Q |
205 |
gtgggagacctatcaaactctcccaccctagactgagcc |
243 |
Q |
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|||||||||||||||| |||||||||||||||||||||| |
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| T |
9034036 |
gtgggagacctatcaagctctcccaccctagactgagcc |
9033998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 194 - 235
Target Start/End: Complemental strand, 1173904 - 1173863
Alignment:
| Q |
194 |
acttgctcagggtgggagacctatcaaactctcccaccctag |
235 |
Q |
| |
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||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
1173904 |
acttgctcacggtgggagacctatcaagctctcccaccctag |
1173863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 204 - 243
Target Start/End: Original strand, 18972310 - 18972349
Alignment:
| Q |
204 |
ggtgggagacctatcaaactctcccaccctagactgagcc |
243 |
Q |
| |
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||||||||||||||||| |||| ||||||||||||||||| |
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| T |
18972310 |
ggtgggagacctatcaagctcttccaccctagactgagcc |
18972349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 199 - 243
Target Start/End: Complemental strand, 6815299 - 6815255
Alignment:
| Q |
199 |
ctcagggtgggagacctatcaaactctcccaccctagactgagcc |
243 |
Q |
| |
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|||| ||| ||||||||||||| ||||||||||||||||||||| |
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| T |
6815299 |
ctcacggtaggagacctatcaaggtctcccaccctagactgagcc |
6815255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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