View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4040_low_3 (Length: 502)
Name: NF4040_low_3
Description: NF4040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4040_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 1 - 489
Target Start/End: Original strand, 53044320 - 53044806
Alignment:
| Q |
1 |
cattgactgcacgggacatttacaagtactcgaatacattttatatcaaataactcatcacaactgatatctcatgatgcaatttttatcagtattatat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53044320 |
cattgactgcacgggacatttacaagtactcgaatacattttatatcaaataactcatcgcaactgatatctcatgatgcaatttttatcagtattatat |
53044419 |
T |
|
| Q |
101 |
ttaatttttcagtggtcttatatcccctatgtatttttgatttctcttagtgggagaatctttagaattccaatcactatattctcaaaactctacccca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53044420 |
ttaatttttcagtggtcttatatcccctatgtattt--gatttctcttagtgggagaatctttagaattccaatcactatattctcaaaactctacccca |
53044517 |
T |
|
| Q |
201 |
ttctaaagatgatcatcaaaatgagaaacttaaatgcacaagagctatattctatcatatgcttcaaatagccagcatcacacttcacagttcctacaca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53044518 |
ttctaaagatgatcatcaaaatgagaaacttaaatgcacaagagctatattctatcatatgcttcaaatagccagcatcacacttcacagttcctacaca |
53044617 |
T |
|
| Q |
301 |
aaatggatgtagaaatatcaaacttgtggcccttgttttacctgatttatctgctaactattaaccctgggataatttcttaccgcattgaatttttatt |
400 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
53044618 |
aaatggatgtagaaatatcaaacttggggcccttgttttacctgatttatctgctaactatcaaccctgggataatttcttaccgcactgaatttttatt |
53044717 |
T |
|
| Q |
401 |
aaaataagatcttggtgctgtagttttatccacttgtggttggtccctactagacattgttcctagtccctacattttcactagtttgg |
489 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
53044718 |
aaaataagatcttggtgctgtagttttatccatttgtgtttggtccctactagacattgttcctagtccctactttttcactagtttgg |
53044806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University