View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4040_low_4 (Length: 445)
Name: NF4040_low_4
Description: NF4040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4040_low_4 |
 | |
|
| [»] scaffold0051 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 20 - 434
Target Start/End: Original strand, 27207342 - 27207756
Alignment:
| Q |
20 |
gtgcataaccttttactaccaatctagccttggctctttgaattgacccatctggattatgcttcaatttgtacacccattttactccaatagcttcttt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27207342 |
gtgcataaccttttactaccaatctagccttggctctttgaattgacccatctggattatgcttcaatttgtacacccattttactccaatagcttcttt |
27207441 |
T |
|
| Q |
120 |
gccatttggcctttcaactagctgccatgttttgtttttctcaatagcatttatttcttcttgcatcgcattcctccaagcatcttctttgattgcttca |
219 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27207442 |
gtcatttggcctttcaactagctgccatgttttgtttttctcaatagcatttatttcttcttgcatcgcattcctccaagcatcttctttgattgcttca |
27207541 |
T |
|
| Q |
220 |
tcaaaattttctggttccacaacacaacagttgcatcttgcataaatatcactcaaatccttcaattttattggagttgagctgggagttgatgaacttg |
319 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27207542 |
tcaaaattttctggttccacaacacaatagttgcatcttgcataaatatcactcaaatccttcaattttattggagttgagctgggagttgatgaacttg |
27207641 |
T |
|
| Q |
320 |
aatctggtgaacttggagaggatgaggaacttggtgtacgtggggttggttgctcattctcagctgctgaattttgttgttgtaatatgattgcagggac |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27207642 |
aatctggtgaacttggagaggatgaggaacttggtgtacatggggttggttgctcattctcagctgctgaattttgttgttgtaatatgattgcagggac |
27207741 |
T |
|
| Q |
420 |
tgttttctcattcat |
434 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
27207742 |
tgttttctccttcat |
27207756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 399; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 20 - 434
Target Start/End: Complemental strand, 24050087 - 24049673
Alignment:
| Q |
20 |
gtgcataaccttttactaccaatctagccttggctctttgaattgacccatctggattatgcttcaatttgtacacccattttactccaatagcttcttt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24050087 |
gtgcataaccttttactaccaatctagccttggctctttgaattgacccatctggattatgcttcaatttgtacacccattttactccaatagcttcttt |
24049988 |
T |
|
| Q |
120 |
gccatttggcctttcaactagctgccatgttttgtttttctcaatagcatttatttcttcttgcatcgcattcctccaagcatcttctttgattgcttca |
219 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24049987 |
gtcatttggcctttcaactagctgccatgttttgtttttctcaatagcatttatttcttcttgcatcgcattcctccaagcatcttctttgattgcttca |
24049888 |
T |
|
| Q |
220 |
tcaaaattttctggttccacaacacaacagttgcatcttgcataaatatcactcaaatccttcaattttattggagttgagctgggagttgatgaacttg |
319 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24049887 |
tcaaaattttctggttccacaacacaatagttgcatcttgcataaatatcactcaaatccttcaattttattggagttgagctgggagttgatgaacttg |
24049788 |
T |
|
| Q |
320 |
aatctggtgaacttggagaggatgaggaacttggtgtacgtggggttggttgctcattctcagctgctgaattttgttgttgtaatatgattgcagggac |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24049787 |
aatctggtgaacttggagaggatgaggaacttggtgtacatggggttggttgctcattctcagctgctgaattttgttgttgtaatatgattgcagggac |
24049688 |
T |
|
| Q |
420 |
tgttttctcattcat |
434 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
24049687 |
tgttttctccttcat |
24049673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 20 - 434
Target Start/End: Complemental strand, 23677811 - 23677397
Alignment:
| Q |
20 |
gtgcataaccttttactaccaatctagccttggctctttgaattgacccatctggattatgcttcaatttgtacacccattttactccaatagcttcttt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23677811 |
gtgcataaccttttactaccaatctagccttggctctttgaattgacccatctggattatgcttcaatttgtacacccattttactccaatagcttcttt |
23677712 |
T |
|
| Q |
120 |
gccatttggcctttcaactagctgccatgttttgtttttctcaatagcatttatttcttcttgcatcgcattcctccaagcatcttctttgattgcttca |
219 |
Q |
| |
|
| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23677711 |
gtcatttggcctttcaactagctgccacgttttgtttttctcaatagcatttatttcttcttgcatcgcattcctccaagcatcttctttgattgcttca |
23677612 |
T |
|
| Q |
220 |
tcaaaattttctggttccacaacacaacagttgcatcttgcataaatatcactcaaatccttcaattttattggagttgagctgggagttgatgaacttg |
319 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23677611 |
tcaaaattttctagttccacaacacaatagttgcatcttgtataaatatcactcaaatccttcaattttattggagttgagctgggagttgatgaacttg |
23677512 |
T |
|
| Q |
320 |
aatctggtgaacttggagaggatgaggaacttggtgtacgtggggttggttgctcattctcagctgctgaattttgttgttgtaatatgattgcagggac |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23677511 |
aatctggtgaacttggagaggatgaggaacttggtgtacatggggttggttgctcattctcagctgctgaattttgttgttgtaatatgattgcagggac |
23677412 |
T |
|
| Q |
420 |
tgttttctcattcat |
434 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
23677411 |
tgttttctccttcat |
23677397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 399; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 20 - 434
Target Start/End: Complemental strand, 26409697 - 26409283
Alignment:
| Q |
20 |
gtgcataaccttttactaccaatctagccttggctctttgaattgacccatctggattatgcttcaatttgtacacccattttactccaatagcttcttt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26409697 |
gtgcataaccttttactaccaatctagccttggctctttgaattgacccatctggattatgcttcaatttgtacacccattttactccaatagcttcttt |
26409598 |
T |
|
| Q |
120 |
gccatttggcctttcaactagctgccatgttttgtttttctcaatagcatttatttcttcttgcatcgcattcctccaagcatcttctttgattgcttca |
219 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26409597 |
gtcatttggcctttcaactagctgccatgttttgtttttctcaatagcatttatttcttcttgcatcgcattcctccaagcatcttctttgattgcttca |
26409498 |
T |
|
| Q |
220 |
tcaaaattttctggttccacaacacaacagttgcatcttgcataaatatcactcaaatccttcaattttattggagttgagctgggagttgatgaacttg |
319 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26409497 |
tcaaaattttctggttccacaacacaatagttgcatcttgcataaatatcactcaaatccttcaattttattggagttgagctgggagttgatgaacttg |
26409398 |
T |
|
| Q |
320 |
aatctggtgaacttggagaggatgaggaacttggtgtacgtggggttggttgctcattctcagctgctgaattttgttgttgtaatatgattgcagggac |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26409397 |
aatctggtgaacttggagaggatgaggaacttggtgtacatggggttggttgctcattctcagctgctgaattttgttgttgtaatatgattgcagggac |
26409298 |
T |
|
| Q |
420 |
tgttttctcattcat |
434 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
26409297 |
tgttttctccttcat |
26409283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 70 - 236
Target Start/End: Original strand, 17533459 - 17533625
Alignment:
| Q |
70 |
tctggattatgcttcaatttgtacacccattttactccaatagcttctttgccatttggcctttcaactagctgccatgttttgtttttctcaatagcat |
169 |
Q |
| |
|
||||||||||| |||| ||||| |||||||| || ||||||||||||||| |||||||| | || ||||||| ||| || |||||||| ||||| |||| |
|
|
| T |
17533459 |
tctggattatggttcaccttgtagacccatttcacgccaatagcttctttgtcatttggcttctccactagctcccaagtcttgtttttttcaattgcat |
17533558 |
T |
|
| Q |
170 |
ttatttcttcttgcatcgcattcctccaagcatcttctttgattgcttcatcaaaattttctggttc |
236 |
Q |
| |
|
||||||||||||||| || |||||||||| ||||||||| | ||||| |||||||||||| |||| |
|
|
| T |
17533559 |
ctatttcttcttgcattgccttcctccaagtatcttctttaaacgcttcttcaaaattttctagttc |
17533625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 20 - 434
Target Start/End: Original strand, 26898929 - 26899343
Alignment:
| Q |
20 |
gtgcataaccttttactaccaatctagccttggctctttgaattgacccatctggattatgcttcaatttgtacacccattttactccaatagcttcttt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26898929 |
gtgcataaccttttactaccaatctagccttggctctttgaattgacccatctggattatgcttcaatttgtacacccattttactccaatagcttcttt |
26899028 |
T |
|
| Q |
120 |
gccatttggcctttcaactagctgccatgttttgtttttctcaatagcatttatttcttcttgcatcgcattcctccaagcatcttctttgattgcttca |
219 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26899029 |
gtcatttggcctttcaactagctgccatgttttgtttttctcaatagcatttatttcttcttgcatcgcattcctccaagcatcttctttgattgcttca |
26899128 |
T |
|
| Q |
220 |
tcaaaattttctggttccacaacacaacagttgcatcttgcataaatatcactcaaatccttcaattttattggagttgagctgggagttgatgaacttg |
319 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26899129 |
tcaaaattttctggttccacaacacaatagttgcatcttgcataaatatcactcaaatccttcaattttattggagttgagctgggagttgatgaacttg |
26899228 |
T |
|
| Q |
320 |
aatctggtgaacttggagaggatgaggaacttggtgtacgtggggttggttgctcattctcagctgctgaattttgttgttgtaatatgattgcagggac |
419 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26899229 |
aatttggtgaacttggagaggatgaggaacttggtgtacatggggttggttgctcattctcagctgctgaattttgttgttgtaatatgattgcagggac |
26899328 |
T |
|
| Q |
420 |
tgttttctcattcat |
434 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
26899329 |
tgttttctccttcat |
26899343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 86; Significance: 6e-41; HSPs: 1)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 70 - 314
Target Start/End: Original strand, 35942 - 36186
Alignment:
| Q |
70 |
tctggattatgcttcaatttgtacacccattttactccaatagcttctttgccatttggcctttcaactagctgccatgttttgtttttctcaatagcat |
169 |
Q |
| |
|
|||||||||||||||| ||||| |||||||| || ||||||||||||||| |||||||| | || ||||||| ||| || |||||||| ||||| |||| |
|
|
| T |
35942 |
tctggattatgcttcaccttgtagacccatttcacgccaatagcttctttgtcatttggcttctccactagctcccaagtcttgtttttttcaattgcat |
36041 |
T |
|
| Q |
170 |
ttatttcttcttgcatcgcattcctccaagcatcttctttgattgcttcatcaaaattttctggttccacaacacaacagttgcatcttgcataaatatc |
269 |
Q |
| |
|
||||||||||||||| || |||||||||| ||||||||| | |||||| ||||||||||||||||| | ||||| | ||||| || |||||| ||| |
|
|
| T |
36042 |
ctatttcttcttgcattgccttcctccaagtatcttctttaaatgcttcttcaaaattttctggttcaattgcacaataattgcacctaacataaacatc |
36141 |
T |
|
| Q |
270 |
a-ctcaaatccttcaattttattggagttgagctgggagttgatga |
314 |
Q |
| |
|
| || || ||||| | |||||||||||||||||| |||| |||||| |
|
|
| T |
36142 |
atctaaactcctt-atttttattggagttgagcttggagatgatga |
36186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University