View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4040_low_5 (Length: 400)
Name: NF4040_low_5
Description: NF4040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4040_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 8032275 - 8032570
Alignment:
| Q |
1 |
aggtgtggatatgagcagaagttttctggtcctactcccccacattccaaaccagctgggatccttggccttggcaacggaaagacaagtattttgtctc |
100 |
Q |
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| T |
8032275 |
aggtgtggatatgagcagaagttttctggtcctactcccccacattccaaaccagctgggatccttggccttggcaacggaaagacaagtattttgtctc |
8032374 |
T |
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| Q |
101 |
aacttcactctatgggctttatcgacaatgtgttaggtcactgccttagtgcagaaggaggaggatatttattccttggagataagttcattccctcatc |
200 |
Q |
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| T |
8032375 |
aacttacctctattggctttatccacaatgtgttaggtcactgccttagtgcagaaggaggaggatatttattccttggagataagttcgttccctcatc |
8032474 |
T |
|
| Q |
201 |
tggaattgtttggacacctataattcaaagttcattagagtaagtgtcggactaaatgttactctctttgtccataataagtaatatattcggcca |
296 |
Q |
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| T |
8032475 |
tggaattgtttggacacctataattcaaagttcattagagtaagtgtcggactaaatgttactctctttgtccataataagtgatatattcggcca |
8032570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 8022261 - 8022596
Alignment:
| Q |
1 |
aggtgtggatatgagcagaagttttctggtcctactcccccacattccaaaccagctgggatccttggccttggcaacggaaagacaagtattttgtctc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| || | |||||||||||||| ||||||| |||||||||||||| |
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| T |
8022261 |
aggtgtggatatgagcagaagttttctggtcctactcccccaccttccacaccag---gggttcttggccttggcaatggaaagataagtattttgtctc |
8022357 |
T |
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| Q |
101 |
aacttcactctatgggctttatcgacaatgtgttaggtcactgccttagtgcagaaggaggaggatatttattccttggagataagttcattccctcatc |
200 |
Q |
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| T |
8022358 |
aacttcactctatgggctttatccacaatgtgttaggtcactgccttagtgcagaaggaggaggatatttattccttggagataagttcattccctcatc |
8022457 |
T |
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| Q |
201 |
tggaattgtttggacacctataattcaaagttcattagagtaagtgtcggactaaatgttactctctttgtccataataagtaatatattcggccatttt |
300 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||| | | ||||| ||||||||| || |||||||||||| ||||||||||||||||| |
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| T |
8022458 |
tggaattttttggacacctataattcaaagttcattagagtaagtattgacctaaacgttactctccttttccataataagtgatatattcggccatttt |
8022557 |
T |
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| Q |
301 |
acatggattaagaaatgtgtataaatgaaatatatatat |
339 |
Q |
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||| |||||||||||| ||||||||||||||||||||| |
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| T |
8022558 |
acacagattaagaaatgcgtataaatgaaatatatatat |
8022596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 323 - 400
Target Start/End: Original strand, 8032570 - 8032647
Alignment:
| Q |
323 |
aaatgaaatatatatatttggccattttacacggatctttcattttgagacaaagaatgtcgtaacttgtaagaactt |
400 |
Q |
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| T |
8032570 |
aaatgaaatatatatatttggccattttacacggatctttcattttgagacaaagaatgtcgtaacttgtaagaactt |
8032647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 62 - 218
Target Start/End: Complemental strand, 10329762 - 10329606
Alignment:
| Q |
62 |
tccttggccttggcaacggaaagacaagtattttgtctcaacttcactctatgggctttatcgacaatgtgttaggtcactgccttagtgcagaaggagg |
161 |
Q |
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|||||||||||||||| |||| |||||||||||||| || ||||||||| | || | || |||||| ||||||| ||| | |||| |||||| |
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| T |
10329762 |
tccttggccttggcaatggaagaacaagtattttgtcccagcttcactctctaggtctgattcgcaatgtagtaggtcattgcttaagtggtcgaggagg |
10329663 |
T |
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| Q |
162 |
aggatatttattccttggagataagttcattccctcatctggaattgtttggacacc |
218 |
Q |
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||||| ||| || |||||||| | ||||||||||||| ||||||||||||||||| |
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| T |
10329662 |
aggatttttgttttttggagatgatctcattccctcatcaggaattgtttggacacc |
10329606 |
T |
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