View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4040_low_6 (Length: 388)
Name: NF4040_low_6
Description: NF4040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4040_low_6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 26 - 388
Target Start/End: Original strand, 53044161 - 53044521
Alignment:
| Q |
26 |
ttgttgaggggtattctgaataggtttcttcagcatcattttccctactgttatcttattctaatattgtgtcttgtttccagcacttcttaaacgtcaa |
125 |
Q |
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| T |
53044161 |
ttgttgaggggtattctgaataggtttcttcagcatcattttccctactgttatcttattctaatattgtgtcttgtttccagcacttcttaaacgtcaa |
53044260 |
T |
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| Q |
126 |
ggattggatgtcaagggcctcgtgaaagctgatccagtaaaagaagaacctcaaccctacattgactgcacgggacatttacaagtactcgaatacattt |
225 |
Q |
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| T |
53044261 |
ggattggatgtcaagggcctcgtgaaagctgatccagtaaaagaagaacctcaaccctacattgactgcacgggacatttacaagtactcgaatacattt |
53044360 |
T |
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| Q |
226 |
tatatcaaataactcatcacaactgatatctcatgatgcaatttttatcagtattatatttaatttttcagtggtcttatatcccctatgtatttttgat |
325 |
Q |
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| T |
53044361 |
tatatcaaataactcatcgcaactgatatctcatgatgcaatttttatcagtattatatttaatttttcagtggtcttatatcccctatgta--tttgat |
53044458 |
T |
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| Q |
326 |
ttctcttagtgggagaatctttagaattccaatcactatattctcaaaactctaccccattct |
388 |
Q |
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| T |
53044459 |
ttctcttagtgggagaatctttagaattccaatcactatattctcaaaactctaccccattct |
53044521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 107 - 215
Target Start/End: Complemental strand, 15962953 - 15962845
Alignment:
| Q |
107 |
agcacttcttaaacgtcaaggattggatgtcaagggcctcgtgaaagctgatccagtaaaagaagaacctcaaccctacattgactgcacgggacattta |
206 |
Q |
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|||||| || |||||||||||| | |||||||||| || |||||||||| ||||||| |||||||||||||| |||||||| ||||| ||||||||| |
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| T |
15962953 |
agcactcctgaaacgtcaaggagtaaatgtcaagggtctgttgaaagctgacgcagtaaaggaagaacctcaaccttacattgattgcactggacattta |
15962854 |
T |
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| Q |
207 |
caagtactc |
215 |
Q |
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| T |
15962853 |
caggtactc |
15962845 |
T |
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