View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4040_low_7 (Length: 338)
Name: NF4040_low_7
Description: NF4040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4040_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 8 - 321
Target Start/End: Original strand, 9241836 - 9242146
Alignment:
| Q |
8 |
tcactacagaacatattaaaaaactgactatccaatttatttcatagtggttcgcatcgggccacatatttaatctagttagactaaattaaattacgca |
107 |
Q |
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||||||||| |||||||||||||| |||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9241836 |
tcactacagtacatattaaaaaaccgactatccaaattgtttcatagtggttcacatcgggccacatatttaatctagttagactaaattaaattacgca |
9241935 |
T |
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| Q |
108 |
aaacacttgatttgtcaggattatgcaatccaaacatgtgcaaatttatgcacgtttttaaatcagccaaacatatgttgattttgtaattattttaaat |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9241936 |
aaacacttgatttgtcaggattatgcaatccaaacatgtgcaaatttacccatgtttttaaatcagccaaacatatgttgattttgtaattattttaaat |
9242035 |
T |
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| Q |
208 |
taatatttacattattgtttacaaattgtcctaacaatcatttaataccactcattactcttattgtttgcacaagcaactcaatttttgatgaacatca |
307 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9242036 |
taa---ttacattattgtttacaaattgtcctaacaatcatttaataccactcgttactcttattgtttgcacaagcaactcaatttttgatgaacatca |
9242132 |
T |
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| Q |
308 |
ctacatataccaat |
321 |
Q |
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|||||| ||||||| |
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| T |
9242133 |
ctacatctaccaat |
9242146 |
T |
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