View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4040_low_8 (Length: 319)
Name: NF4040_low_8
Description: NF4040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4040_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-175; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-175
Query Start/End: Original strand, 7 - 316
Target Start/End: Original strand, 3112040 - 3112349
Alignment:
| Q |
7 |
gtatcataggattgtatcgaagttgactcctccaacttctgaaagttggaacaaaggttgtgtgctatatgctaaaaagggtacaggaaaggcttggatg |
106 |
Q |
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| T |
3112040 |
gtatcataggattgtatcgaagttgactcctccaacttctgaaagttggaacaaaggttgtgtgctatatgctaaaaagggtacaggaaaggcttggatg |
3112139 |
T |
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| Q |
107 |
caaccattgctacatgtgaataagatgtttgtgtggccaaaccatgcaatacaaatttttgtctctaacattgacaatccagctttggccactttttgtg |
206 |
Q |
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| T |
3112140 |
caaccattgctacatgtgaataagatgtttgtgtggccaaaccatgcaatacaaatttttgtctctaacattgacaatccagctttggccactttttgtg |
3112239 |
T |
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| Q |
207 |
aaccagttgagaaggccaattcaagccattcttttactgcaggacttgctcacagtgttggtctcaggtacatttatcttttttcaatttcatttcgata |
306 |
Q |
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| T |
3112240 |
aaccagttgagaaggccaattcaagccattcttttactgcaggacttgctcacagtgttggtctcaggtacatttatcttttttcaatttcatttcgata |
3112339 |
T |
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| Q |
307 |
tcaattactc |
316 |
Q |
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| T |
3112340 |
tcaattactc |
3112349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 8 - 281
Target Start/End: Complemental strand, 35893984 - 35893708
Alignment:
| Q |
8 |
tatcataggattgtatcgaagttgactcctccaacttctgaaagttggaacaaaggttgtgtgctatatgctaaaaagggtacaggaaaggcttggatgc |
107 |
Q |
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| T |
35893984 |
tatcataggatcatgtccaagttgattcctccaacatctgaaacttggaatagaggttgtgtaatttatgctaaaaaggatagtggcaaggcttggatcc |
35893885 |
T |
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| Q |
108 |
aacca---ttgctacatgtgaataagatgtttgtgtggccaaaccatgcaatacaaatttttgtctctaacattgacaatccagctttggccactttttg |
204 |
Q |
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| T |
35893884 |
aaccactcatccatcatgccaataagaagtttgtgtggccaaaccatgcaaaactagtttctttgtcttctgttgacaacctaggattggccactttgtg |
35893785 |
T |
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| Q |
205 |
tgaaccagttgagaaggccaattcaagccattcttttactgcaggacttgctcacagtgttggtctcaggtacattt |
281 |
Q |
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|| |||||||| |||| |||||||| || || ||||||| ||||| ||||| ||||||||| |||||| ||||| |
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| T |
35893784 |
ccaaacagttgaggaggctaattcaagtcactcctttactgatggactggctcatagtgttggtttcaggtgcattt |
35893708 |
T |
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