View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4041_high_10 (Length: 312)
Name: NF4041_high_10
Description: NF4041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4041_high_10 |
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Alignment Details
Target: chr6 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 164 - 297
Target Start/End: Complemental strand, 1731388 - 1731255
Alignment:
| Q |
164 |
ggtaccataaaaactcatcagattaagaaaaatacctcgaaaaccaagatcagcatttccaagaaacagcatgttcatgttattcccacgacaagcagaa |
263 |
Q |
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| T |
1731388 |
ggtaccataaaaactcaacagattaagaaaaatacctcgaaaaccaagatcagcatttccaagaaacagcatgttcatgttattcccacgacaagcagaa |
1731289 |
T |
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| Q |
264 |
gaatcaaagtaaagacgaccagactccatttttt |
297 |
Q |
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| T |
1731288 |
gaatcaaagtaaagacgaccagactccatttttt |
1731255 |
T |
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Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 1731542 - 1731457
Alignment:
| Q |
1 |
aaatcaatattgttatactaaacaccttcacttgggtccgaacctgaacttctcaattgtgtgtgagtttcaggtgtcccaccatc |
86 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
1731542 |
aaatcaatattgttatactaaacaccttcacttgggtccaaacctgaacttctcagttgtgtgtgagtttcaggtgtcccaccatc |
1731457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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