View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4041_high_14 (Length: 239)
Name: NF4041_high_14
Description: NF4041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4041_high_14 |
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| [»] chr3 (11 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 15 - 239
Target Start/End: Complemental strand, 5849175 - 5848951
Alignment:
| Q |
15 |
atcaagttcttagaaatagcaccggtatatgcttaaaaatgacaagagaatttaagtgtcacctaatttcaagtttacaacagtgcttaataatatgaag |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5849175 |
atcaagttcttagaaatagcaccggtatatgcttaaaaatgacaagagaatttaagtgtcacctaatttcaagtttacaacagtgcttaataatatgaag |
5849076 |
T |
|
| Q |
115 |
aaaaatgctgaaatatatgcacttgtgctatatatatctcactgacaaggcaaaagatgtaataggatacaaaaaataccgagttctgaagatgcgagtc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5849075 |
aaaaatgctgaaatatatgcacttgtgctatatatatctcactgacaaggcaaaagatgtaataggatacaaaaaataccgagttctgaagatgcgagtc |
5848976 |
T |
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| Q |
215 |
gtatgtaaatgtcttgtcctatgtc |
239 |
Q |
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||||||||||||||||||||||||| |
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| T |
5848975 |
gtatgtaaatgtcttgtcctatgtc |
5848951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 234
Target Start/End: Original strand, 5454810 - 5455023
Alignment:
| Q |
20 |
gttcttagaaatagcaccggtatatgcttaaaaatgacaagagaattta--agtgtcacctaatttcaagtttacaacagtgcttaataatatgaagaaa |
117 |
Q |
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||||||||||||||| | |||| || |||| ||| ||||||||||| ||||| || ||||||||||||| || || ||||||||||||| |||| | |
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| T |
5454810 |
gttcttagaaatagcccaggtacatacttacttgtgaaaagagaatttactagtgtgacgtaatttcaagttttcagcaatgcttaataatatcaagaca |
5454909 |
T |
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| Q |
118 |
aatgctgaaatatatgcacttgtgctatatatatctcactgacaaggcaaaagatgtaataggatacaaaaaataccgagttctgaagatgcgagtcgta |
217 |
Q |
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|||| |||||||||| || ||| ||||||||| ||||| ||| ||||| |||||||| || | | |||||||| |||||||||||||| | |||| |
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| T |
5454910 |
aatggtgaaatatataagtttatgc--tatatatctaactgaaaagacaaaatatgtaataaga-aaagaaaataccaagttctgaagatgccatccgta |
5455006 |
T |
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| Q |
218 |
tgtaaatgtcttgtcct |
234 |
Q |
| |
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||||||||||||||||| |
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| T |
5455007 |
tgtaaatgtcttgtcct |
5455023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 46 - 234
Target Start/End: Original strand, 5490013 - 5490200
Alignment:
| Q |
46 |
cttaaaaatgacaagagaattta--agtgtcacctaatttcaagtttacaa-cagtgcttaataatatgaagaaaaatgctgaaatatatgcacttgtgc |
142 |
Q |
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||||||| ||| ||||||||||| |||||||| ||||||||||||| ||| |||||||||||||||| || | ||||| |||||||| | | || ||| |
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| T |
5490013 |
cttaaaagtgaaaagagaatttactagtgtcacgtaatttcaagttttcaaacagtgcttaataatatcaacacaaatggtgaaatat-taaatttatgc |
5490111 |
T |
|
| Q |
143 |
tatatatatctcactgacaaggcaaaagatgtaataggatacaaaaaataccgagttctgaagatgcgagtcgtatgtaaatgtcttgtcct |
234 |
Q |
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||||||||| ||||| ||| ||||| |||||||| || | |||||||| |||||||||||||| | ||||||||||||||||||||| |
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| T |
5490112 |
--tatatatctaactgaaaagacaaaatatgtaataaga-aatgaaaataccaagttctgaagatgccatccgtatgtaaatgtcttgtcct |
5490200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 20 - 234
Target Start/End: Original strand, 20343429 - 20343643
Alignment:
| Q |
20 |
gttcttagaaatagcaccggtatatgcttaaaaatgacaagagaattta--agtgtcacctaatttcaagtttacaacagtgcttaataatatgaagaaa |
117 |
Q |
| |
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||||||||||||| | |||| || ||| ||| ||| ||||||||||| |||||||| | ||||||| | | |||||| ||||||| ||| |||| | |
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| T |
20343429 |
gttcttagaaatatttcaggtacatactttaaagtgaaaagagaatttattagtgtcacatgatttcaactattcaacaggacttaatactatcaagata |
20343528 |
T |
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| Q |
118 |
aatgctgaaatatatg-cacttgtgctatatatatctcactgacaaggcaaaagatgtaataggatacaaaaaataccgagttctgaagatgcgagtcgt |
216 |
Q |
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|||||||||||||||| | |||||| |||||||| |||| |||| |||||||||||||||| | |||||||| |||||||||||||| || ||| |
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| T |
20343529 |
aatgctgaaatatatgaaatttgtgc--aatatatctaactggaaaggaaaaagatgtaatagga-aatgaaaataccaagttctgaagatgctagccgt |
20343625 |
T |
|
| Q |
217 |
atgtaaatgtcttgtcct |
234 |
Q |
| |
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|| ||||||||||||||| |
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| T |
20343626 |
atataaatgtcttgtcct |
20343643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 187 - 235
Target Start/End: Complemental strand, 5802606 - 5802558
Alignment:
| Q |
187 |
aaaataccgagttctgaagatgcgagtcgtatgtaaatgtcttgtccta |
235 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
5802606 |
aaaataccaagttctgaagatgcgagtcgtatgtaaatgtcttgtccta |
5802558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 48 - 234
Target Start/End: Original strand, 5446279 - 5446464
Alignment:
| Q |
48 |
taaaaatgacaagagaatttaa--gtgtcacctaatttcaagtttacaacagtgcttaataatatgaagaaaaatgctgaaatatatgcacttgtgctat |
145 |
Q |
| |
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||||| ||| |||||||||||| ||||||| ||||||||||||| ||| ||||||||||||| || | ||||| |||||||| | | || |||||| |
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| T |
5446279 |
taaaagtgaaaagagaatttaatagtgtcacgtaatttcaagttttcaaggatgcttaataatatcaacacaaatggtgaaatatgtaaatttatgctat |
5446378 |
T |
|
| Q |
146 |
atatatctcactgacaaggcaaaagatgtaataggatacaaaaaataccgagttctgaagatgcgagtcgtatgtaaatgtcttgtcct |
234 |
Q |
| |
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|||| || ||||| | | ||||| |||||||| | | |||| |||| |||||||||||||| || ||||||||||||||||||||| |
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| T |
5446379 |
atat--ctaactgaaaggacaaaatatgtaataacaaatgaaaa-taccaagttctgaagatgccagccgtatgtaaatgtcttgtcct |
5446464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 187 - 235
Target Start/End: Complemental strand, 5828274 - 5828226
Alignment:
| Q |
187 |
aaaataccgagttctgaagatgcgagtcgtatgtaaatgtcttgtccta |
235 |
Q |
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|
|||||||| ||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
5828274 |
aaaataccaagttcggaagatgcgagtcgtatgtaaatgtcttgtccta |
5828226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 145 - 235
Target Start/End: Original strand, 5525762 - 5525851
Alignment:
| Q |
145 |
tatatatctcactgacaaggcaaaagatgtaataggatacaaaaaataccgagttctgaagatgcgagtcgtatgtaaatgtcttgtccta |
235 |
Q |
| |
|
||||||||| ||||| |||| |||| |||| |||||| | |||||||| |||||||||||||| | ||||||||||||||||||||||| |
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| T |
5525762 |
tatatatctaactgaaaaggaaaaatatgtgatagga-agttaaaataccaagttctgaagatgccaatcgtatgtaaatgtcttgtccta |
5525851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 234
Target Start/End: Complemental strand, 5854345 - 5854257
Alignment:
| Q |
145 |
tatatatctcactgacaaggcaaaagatgtaataggatacaaaaaataccgagttctgaagatgcgagtcgtatgtaaatgtcttgtcct |
234 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||| | ||||||| |||||||||||||| || |||||| |||||||||||||| |
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| T |
5854345 |
tatatatcagactgaaaaggcaaaagatgtaatagga-aatgtaaataccaagttctgaagatgccagccgtatgaaaatgtcttgtcct |
5854257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 235
Target Start/End: Original strand, 5484759 - 5484807
Alignment:
| Q |
187 |
aaaataccgagttctgaagatgcgagtcgtatgtaaatgtcttgtccta |
235 |
Q |
| |
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|||||||| |||||||||||||| || ||||||||||| |||||||||| |
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|
| T |
5484759 |
aaaataccaagttctgaagatgccagccgtatgtaaatttcttgtccta |
5484807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 234
Target Start/End: Original strand, 5502966 - 5503013
Alignment:
| Q |
187 |
aaaataccgagttctgaagatgcgagtcgtatgtaaatgtcttgtcct |
234 |
Q |
| |
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|||||||| || ||||||||||| || ||||||||||||||||||||| |
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| T |
5502966 |
aaaataccaagctctgaagatgccagccgtatgtaaatgtcttgtcct |
5503013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 48 - 234
Target Start/End: Complemental strand, 25809533 - 25809348
Alignment:
| Q |
48 |
taaaaatgacaagagaatttaa--gtgtcacctaatttcaagtttacaacagtgcttaataatatgaagaaaaatgctgaaatatatgcacttgtgctat |
145 |
Q |
| |
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||||| ||| |||||||||||| ||||||| ||||||||||||| ||| ||||||||||||| || | ||||| |||||||| | | || |||||| |
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| T |
25809533 |
taaaagtgaaaagagaatttaatagtgtcacgtaatttcaagttttcaaggatgcttaataatatcaacacaaatggtgaaatatgtaaatttatgctat |
25809434 |
T |
|
| Q |
146 |
atatatctcactgacaaggcaaaagatgtaataggatacaaaaaataccgagttctgaagatgcgagtcgtatgtaaatgtcttgtcct |
234 |
Q |
| |
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|||| || ||||| | | ||||| |||||||| | | |||| |||| |||||||||||||| || ||||||||||||||||||||| |
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| T |
25809433 |
atat--ctaactgaaaggacaaaatatgtaataacaaatgaaaa-taccaagttctgaagatgccagccgtatgtaaatgtcttgtcct |
25809348 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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