View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4041_high_2 (Length: 460)
Name: NF4041_high_2
Description: NF4041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4041_high_2 |
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| [»] scaffold0045 (3 HSPs) |
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| [»] scaffold0457 (2 HSPs) |
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Alignment Details
Target: scaffold0045 (Bit Score: 403; Significance: 0; HSPs: 3)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 18 - 449
Target Start/End: Original strand, 25285 - 25716
Alignment:
| Q |
18 |
agaaagaataaagataaggtggaaacaattgatctaatggatgggttgatgcaaattgaagatgatgatggtgacaaattgagtgacaaagaagttgtag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25285 |
agaaagaataaagataaggtggaaacaattgatctaatggatgggttgatgcaaattgaagatgatgatggtgacaaattgagtgacaaagaagttgtag |
25384 |
T |
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| Q |
118 |
acaacattgtctctctagtagctgctggatatatatcaacttcccttgcatctacttgggctatataccttcttgctaagtatccaattgtgctaaaaaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25385 |
acaacattgtctctctagtagctgctggatatatatcaacttcccttgcatctacttgggctatataccttcttgctaagtatccaattgtgctaaaaaa |
25484 |
T |
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| Q |
218 |
gcttagggtaatatatataatttttcgttgataatttgtatttgtctaagtgtcggtccaataatttttaatagtaaataaggtccaaaacaaattttaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25485 |
gcttagggtaatatatataatttttcgttgataatttgtatttgtctaagtgtcggtccaataatttttaatagtaaataaggtccaaaacaaattttaa |
25584 |
T |
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| Q |
318 |
tatataagacatttcttatctgcatatgaaaccttgtttcgtttataaaatctaataaaaataannnnnnnattgatagacctaaaacgagaactttagc |
417 |
Q |
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| T |
25585 |
tatatgagacatttcttatctgcatatgaaaccttgtttcgtttataaaatccaataaaaataatttttttattgatagacctaaaacgagaactttagc |
25684 |
T |
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| Q |
418 |
agtcttacctttaaatcggtcttacacaggtt |
449 |
Q |
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| T |
25685 |
agtcttacctttaaatcggtcttacacaggtt |
25716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 31 - 213
Target Start/End: Original strand, 32508 - 32690
Alignment:
| Q |
31 |
ataaggtggaaacaattgatctaatggatgggttgatgcaaattgaagatgatgatggtgacaaattgagtgacaaagaagttgtagacaacattgtctc |
130 |
Q |
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| T |
32508 |
ataaggttgaaacaagtgatctaatggatgggttgatgcaaattgaagatggtgaaggtgataaattgagtgacaaagaagttgtagacaacattgtctc |
32607 |
T |
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| Q |
131 |
tctagtagctgctggatatatatcaacttcccttgcatctacttgggctatataccttcttgctaagtatccaattgtgctaa |
213 |
Q |
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| T |
32608 |
tctagtggctgctggatatatccctacttcccttgcatcaacttgggctatttaccttcttgctaagtatccaattgtgctaa |
32690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 17 - 227
Target Start/End: Original strand, 39878 - 40091
Alignment:
| Q |
17 |
aagaaagaataaagataaggtggaaa---caattgatctaatggatgggttgatgcaaattgaagatgatgatggtgacaaattgagtgacaaagaagtt |
113 |
Q |
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| T |
39878 |
aagaaagaatgaaaataaggtgaaaagtacaagtgatctaatggatgggttgatgcaaattgaagatggtgaaggtgataaattgagtgacaaagaagtt |
39977 |
T |
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| Q |
114 |
gtagacaacattgtctctctagtagctgctggatatatatcaacttcccttgcatctacttgggctatataccttcttgctaagtatccaattgtgctaa |
213 |
Q |
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||||||||||||||||||||||| || ||||||||| || ||||||||| |||| | |||||||| |||||||||||||||||||||||||| |||| |
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| T |
39978 |
gtagacaacattgtctctctagtgattggtggatatatgtctacttccctttcatccatgtgggctatttaccttcttgctaagtatccaattgttctaa |
40077 |
T |
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| Q |
214 |
aaaagcttagggta |
227 |
Q |
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| T |
40078 |
aaaagcttagggta |
40091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0457 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: scaffold0457
Description:
Target: scaffold0457; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 18 - 257
Target Start/End: Complemental strand, 4939 - 4699
Alignment:
| Q |
18 |
agaaagaataaagataaggtggaaacaattgatctaatggatgggttgatgcaaattgaagatgatgatggtgacaaattgagtgacaaagaagttgtag |
117 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4939 |
agaaaaaataaagataaggtggaaacaattgatctaatggatgggttgatgcaaattgaagatgatgatggtgacaaattgagtgacaaagaagttgtag |
4840 |
T |
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| Q |
118 |
acaacattgtctctctagtagctgctggatatatatcaacttcccttgcatctacttgggctatataccttcttgctaagtatccaattgtgctaa-aaa |
216 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
4839 |
acaacattgtctctctagtagctgctggatatctatcaacttcccttgcatctacttgggctatataccttcttgctaagtatccaattgtgctaaaaaa |
4740 |
T |
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| Q |
217 |
agcttagggtaatatatataatttttcgttgataatttgta |
257 |
Q |
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| T |
4739 |
agcttagggtaatatatataatttttcgttgataatttgta |
4699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0457; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 255 - 334
Target Start/End: Complemental strand, 4406 - 4327
Alignment:
| Q |
255 |
gtatttgtctaagtgtcggtccaataatttttaatagtaaataaggtccaaaacaaattttaatatataagacatttctt |
334 |
Q |
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||||||||||| |||| ||||||||||||||||||||||||| ||||| || |||||||||||||| |||||||||| |
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| T |
4406 |
gtatttgtctacgtgttggtccaataatttttaatagtaaatgaggtctgaagtaaattttaatatatgcgacatttctt |
4327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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