View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4041_high_4 (Length: 383)
Name: NF4041_high_4
Description: NF4041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4041_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 16 - 375
Target Start/End: Original strand, 38117239 - 38117597
Alignment:
| Q |
16 |
ctaactctgggaatacttgggctttcttggatcattaatatccaattcatttttattgggctgtgcttgactgtttatcattagattaaactttacttga |
115 |
Q |
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| T |
38117239 |
ctaactctgggaatacttgggctttcttggatcattaatatccaattcatttttattgggctgtgcttgactgtttatcattagattaaactttacttga |
38117338 |
T |
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| Q |
116 |
aaatatgtaatcatgagtcatgacatatggttaaaattgttggaggtatggtgatggtaatgacagataaatctgtagcattttagcttgagggatggca |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38117339 |
aaatatgtaatcatgagtcatgacatatggttaaaattgttggaggtatggtgatggtaatgacagataaatctgtagcattttagcttgagggatggca |
38117438 |
T |
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| Q |
216 |
tttcatgaacacgagtacaggaccgtgtttcttgaattctgtaagtgctgcatggtaaaaagatgcagtagtagtccaaccttttccccccaaaatgtta |
315 |
Q |
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| T |
38117439 |
tttcatgaacacgagtacaggaccgtgtttcttgaattctgtaagtgctgcatggtaaaaagatgcagtagtagtccaaccttttccccccaaaatgtta |
38117538 |
T |
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| Q |
316 |
nnnnnnnnnnnaacttgcctttgtttgaattcaacttgcttgactaatttgttgatgatg |
375 |
Q |
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| T |
38117539 |
-ttttttttttaacttgcctttgtttgaattcaacttgcttgactaatttgttgatgatg |
38117597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 129 - 288
Target Start/End: Original strand, 38161156 - 38161308
Alignment:
| Q |
129 |
tgagtcatgacatatggttaaaattgttggaggtatggtgatggtaatgacagataaatctgtagcattttagcttgagggatggcatttcatgaacacg |
228 |
Q |
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| T |
38161156 |
tgagtcatggcatttggttactcttgttggaggtagtgtaatagtaatgacagataaatctgtagcattttagtttgagggctggcatttca-gaa---- |
38161250 |
T |
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| Q |
229 |
agtacaggaccg-tgtttcttgaattctgtaagtgctgcatggtaaaa-agatgcagtagta |
288 |
Q |
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| T |
38161251 |
---acaagaccaatgtttcttgaattatgtaagtg-tgcatggtaaaagagatgcagtagta |
38161308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 38161067 - 38161148
Alignment:
| Q |
18 |
aactctgggaatacttgggctttcttggatcattaatatccaattcatttttattgggctgtgcttgactgtttatcattag |
99 |
Q |
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| T |
38161067 |
aactctgggaatacttaggttgttttggatcattaatatccaattcatttctgttgggctgtgttttacggtttatcattag |
38161148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 243 - 292
Target Start/End: Original strand, 38139672 - 38139721
Alignment:
| Q |
243 |
tttcttgaattctgtaagtgctgcatggtaaaaagatgcagtagtagtcc |
292 |
Q |
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| T |
38139672 |
tttcttgaattttacaagtgctgcatggtaaaaagatgcagtaatagtcc |
38139721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 375
Target Start/End: Original strand, 38139771 - 38139820
Alignment:
| Q |
327 |
aacttgcctttgtttgaattcaacttg-cttgactaatttgttgatgatg |
375 |
Q |
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| T |
38139771 |
aacttgcctttgtttgtatttaacttgccttgaccaatttgttgatgatg |
38139820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 327 - 374
Target Start/End: Original strand, 38161326 - 38161374
Alignment:
| Q |
327 |
aacttgcctttgtttgaattcaacttg-cttgactaatttgttgatgat |
374 |
Q |
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| T |
38161326 |
aacttgcctttgtttgaatttaacttgccttgaccaatttgttgttgat |
38161374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 16 - 220
Target Start/End: Original strand, 49005041 - 49005245
Alignment:
| Q |
16 |
ctaactctgggaatacttgggctttcttggatcattaatatccaattcatttttattgggctgtgcttgactgtttatcattagattaaactttacttga |
115 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
49005041 |
ctaactctgggaatacttgggctgtcttggatcattaatatccaattcatttctattgggctgtgtttgactgtttatcattagattaaactttacttga |
49005140 |
T |
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| Q |
116 |
aaatatgtaatcatgagtcatgacatatggttaaaattgttggaggtatggtgatggtaatgacagataaatctgtagcattttagcttgagggatggca |
215 |
Q |
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| T |
49005141 |
aaatatgtaatcatcattcatgacatttggttaaaattgttggaggtatggtaatagtaatgacagataaatctatagcatcttagtttgaaggatggca |
49005240 |
T |
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| Q |
216 |
tttca |
220 |
Q |
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||||| |
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| T |
49005241 |
tttca |
49005245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 276 - 315
Target Start/End: Original strand, 49005279 - 49005318
Alignment:
| Q |
276 |
agatgcagtagtagtccaaccttttccccccaaaatgtta |
315 |
Q |
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| T |
49005279 |
agatgcagtagtagtccaacctttttccccctaaatgtta |
49005318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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