View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4041_high_6 (Length: 379)
Name: NF4041_high_6
Description: NF4041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4041_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 6020019 - 6019656
Alignment:
| Q |
1 |
atgaatatacaagatcggaactgactacatttgtaaaagacaggaaatatgatggcatatattaagcaaaaggtggtacttggtagaatgtcatctataa |
100 |
Q |
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| T |
6020019 |
atgaatatacaagatcggaactgactacatttgtaaaagacaggaaatatgatggcatatattaagcaaaaggtggtacttggtagaatgtcatctataa |
6019920 |
T |
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| Q |
101 |
gatagtttggtcagacgagtaaaagaccaataataataattgatcaaatgcgaagtggcttgcaatgtcagatgctgaatatgattaagaaaaacagcaa |
200 |
Q |
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| T |
6019919 |
gatagtttggtcagacgagtaaaagaccaataataataattgatcaaatgcgaagtggcttgcaatgtcagatgctgaatatgattaagaaaaacagcaa |
6019820 |
T |
|
| Q |
201 |
aactattaaaaatgatttggatctaaatggttgctcctaagtcccaagtcttggttttgatagacataatggcatcatttaatctgtgtaggagtgacct |
300 |
Q |
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| T |
6019819 |
aactattaaaaatgatttggatctaaatggttgctcctaagtcccaagtcttggttttgatagacataatggcatcatttaatctgtgtaggagtgacct |
6019720 |
T |
|
| Q |
301 |
tactcagagaaatgactcttgaagtcttgttgcagtagggtataaaataagtatatgtgactat |
364 |
Q |
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| T |
6019719 |
tactcagagaaatgactcttgaagtcttgttgcagtagggtataaaataagtatatgtgactat |
6019656 |
T |
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