View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4041_high_8 (Length: 321)
Name: NF4041_high_8
Description: NF4041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4041_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 181; Significance: 9e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 13 - 303
Target Start/End: Original strand, 13106817 - 13107105
Alignment:
| Q |
13 |
cagatcctaagtcaatactactagaccaacccaactggatttattactacacaattttaaatgtaaaaggtaccgagtttaaatgtttaaacaatgtctt |
112 |
Q |
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| T |
13106817 |
cagatcccaaatcaatactactagatcaacccaactgggtttattactacacaattttaaatgtaaaaggtatcgaatttaaataattaaacaatgtctt |
13106916 |
T |
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| Q |
113 |
aagagtatttattt--atttttcataaaaataaatcaataaataacttgggtatgtttatgtctgctataagattagatgagatgtgtgtcaattgaaga |
210 |
Q |
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| T |
13106917 |
aagagtacttattagcatttttcataaaaaaaaaa----aaaaaatttgggaaggtttatgtctactataagattagatgagatgtgtgtcaattgaaga |
13107012 |
T |
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| Q |
211 |
gaccttaagaaatattaatttgattctttattgcatctgcaaaaatatcatttctttgtatgaagaagggaaaccaccttcttctatttctac |
303 |
Q |
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| T |
13107013 |
gacctttagaaatgttaatttgattctttattgtatctgcaaaaatagcatttctttgtatgaagaagggaaaccaccttcttctatttctac |
13107105 |
T |
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Target: chr6 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 225 - 303
Target Start/End: Complemental strand, 6127731 - 6127653
Alignment:
| Q |
225 |
ttaatttgattctttattgcatctgcaaaaatatcatttctttgtatgaagaagggaaaccaccttcttctatttctac |
303 |
Q |
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| T |
6127731 |
ttaatttgattctttattgtatctgcaaaaatatcatttctttgtatgaagaagggaaaccaccttcttctatttctac |
6127653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 225 - 303
Target Start/End: Original strand, 13220640 - 13220718
Alignment:
| Q |
225 |
ttaatttgattctttattgcatctgcaaaaatatcatttctttgtatgaagaagggaaaccaccttcttctatttctac |
303 |
Q |
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| T |
13220640 |
ttaatttgattctttattgtatctgcaaaaatagcatttctttgtatgaagaagggaaaccaccttcttctatttctac |
13220718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 225 - 283
Target Start/End: Complemental strand, 28680886 - 28680828
Alignment:
| Q |
225 |
ttaatttgattctttattgcatctgcaaaaatatcatttctttgtatgaagaagggaaa |
283 |
Q |
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||||||||||||||||| | |||| |||||||||||| |||||| |||||||||||||| |
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| T |
28680886 |
ttaatttgattctttatcgtatctacaaaaatatcatatctttgaatgaagaagggaaa |
28680828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 283
Target Start/End: Original strand, 31860661 - 31860720
Alignment:
| Q |
224 |
attaatttgattctttattgcatctgcaaaaatatcatttctttgtatgaagaagggaaa |
283 |
Q |
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|||||| ||||||||||| | |||||||||||||| || |||||| |||||||||||||| |
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| T |
31860661 |
attaatatgattctttatcgtatctgcaaaaatattatatctttgaatgaagaagggaaa |
31860720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 25297812 - 25297779
Alignment:
| Q |
13 |
cagatcctaagtcaatactactagaccaacccaa |
46 |
Q |
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| T |
25297812 |
cagatcctaagtcaataccactagaccaacccaa |
25297779 |
T |
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