View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4041_high_9 (Length: 319)
Name: NF4041_high_9
Description: NF4041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4041_high_9 |
 | |
|
| [»] chr4 (4 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 2 - 319
Target Start/End: Original strand, 46666523 - 46666846
Alignment:
| Q |
2 |
cagactgggcagcaggaggatccggcaattcttgcatcacagactgcttgtatgtctatcggttaatccaattagattatgttaattaagctttaattaa |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46666523 |
cagactgggcagcaggaggatccggcaattcttgcatcacagactgcttgtatgtctatcggttaatccaattagattatgttaattaagctttaattaa |
46666622 |
T |
|
| Q |
102 |
ttcttgtatatttctatgatatatata--------agattgtgagttatttttgctagacagttttgtagtttaaataaacttgcgtacaaatttttggt |
193 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46666623 |
ttcttgtatatttctatgatatatatatatatataagattg--agttatttttgctagacagttttgtagtttaaataaacttgcgtacaaatttttggt |
46666720 |
T |
|
| Q |
194 |
tttccagactctcacaatgatgttgaagcattagcagagctttttaagagcatcaacaattcaactgtcgctaatggagaaataagcaaggtactactat |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46666721 |
tttccagactctcacaatgatgttgaagcattagcagagctttttaagagcatcaacaattcaactgtcgctaatggagaaataagcaaggtactactat |
46666820 |
T |
|
| Q |
294 |
acatttaatttctgcataggcttttt |
319 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
46666821 |
acatttaatttctgcataggcttttt |
46666846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 46666483 - 46666529
Alignment:
| Q |
1 |
gcagactgggcagcaggaggatccggcaattcttgcatcacagactg |
47 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
46666483 |
gcagactaggcagcaggaggatccagcaattcttgcatcacagactg |
46666529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 46666445 - 46666481
Alignment:
| Q |
2 |
cagactgggcagcaggaggatccggcaattcttgcat |
38 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46666445 |
cagactgggcagcaggaggatccggcaattcttgcat |
46666481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 47
Target Start/End: Original strand, 46666414 - 46666451
Alignment:
| Q |
10 |
gcagcaggaggatccggcaattcttgcatcacagactg |
47 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
46666414 |
gcaggaggaggatccagcaattcttgcatcacagactg |
46666451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University