View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4041_low_1 (Length: 502)
Name: NF4041_low_1
Description: NF4041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4041_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 19 - 498
Target Start/End: Complemental strand, 27009888 - 27009409
Alignment:
| Q |
19 |
agctggagcagaattcaaaccaaagcacttaatttcattactgcttttaccttctggtttcactctaaccttttcactgccatccacccaatttttcagc |
118 |
Q |
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| T |
27009888 |
agctggagcagaattcataccaaagcacttaatttcattactgcttttaccttctggtttcactctaaccttttcactgccatccacccaatttttcagc |
27009789 |
T |
|
| Q |
119 |
tttttaatcaactttccctttttggaactagaagggttaccatgaaaagtagaagaaccaatgcaagacacattttgatgatccaaaaaggaacaatgca |
218 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| | |
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| T |
27009788 |
tttttaatcaactttccctttttggaactagaagggtcaccatgaaaagtagaagaaccaatggaagacacattttgatgatccaaaaagggacaatgga |
27009689 |
T |
|
| Q |
219 |
attcatgtttcattaactcttgccttaaacaaacattaatcttcctcaagtaaataagttcttcaatttcattttcatgttccttcttaacttgctccaa |
318 |
Q |
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||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27009688 |
attcatggttcattaactcttggcttaaacaaacattaatcttcctcaagtaaataagttcttcaatttcattttcatgttccttcttaacttgctccaa |
27009589 |
T |
|
| Q |
319 |
ttcattcagaaccttgttgtaatcttccttcataacatcctttgattcaatctgcaaataatatttcaaaggttttttatgtaactcttctttacatcca |
418 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27009588 |
ttcattcagaaccttgttgtaatcttcctccataacatcctttgattcaatctgcaaataatatttcaaaggttttttatgtaactcttctttacatcca |
27009489 |
T |
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| Q |
419 |
tattcttctgatgtctcaagcttcttcacaagttcattcttctcatcttgaaaatcatccaaaatccttttcatctctct |
498 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27009488 |
tattcttctgatgtctcaagcttcttcacaagttcattcttctcatcttgaaaatcatccaaaatccttttcatctctct |
27009409 |
T |
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