View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4041_low_13 (Length: 302)
Name: NF4041_low_13
Description: NF4041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4041_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 9 - 284
Target Start/End: Original strand, 10494868 - 10495143
Alignment:
| Q |
9 |
agcagagaaaatgtgaattaatgcaggaaaggaaagtgtatgattaaattagtaccttatagttttgtctgttgaagaaggtgatatctgcagggataga |
108 |
Q |
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| T |
10494868 |
agcagagaaaatgtgaactaatgcaggaaaagaaagtgtatgattaaattagtaccttatagttttgtctgttgaagaaggtgatatctgcagggataga |
10494967 |
T |
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| Q |
109 |
atgggaaatgggattagacatccagttcattcgaacattgcgtcgacctccctgattctgattgaaaagattccgccatgactgatttttatgataagac |
208 |
Q |
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| T |
10494968 |
atgggaaatgggattagacatccagttcattcgaacatggtgtcgacctccctgattctgattgaaaagattccgccatgactgatttttatgataagac |
10495067 |
T |
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| Q |
209 |
ttatagaacttgtcaattttctttgtttctttttgagcttccttgctcttttgaatatcaccggcgtatagccagt |
284 |
Q |
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| T |
10495068 |
ttatagaacttttcaattttctttgtttctttttgagcttccttgctcttttgaatatcaccggcgtatagccagt |
10495143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 7476285 - 7476237
Alignment:
| Q |
14 |
agaaaatgtgaattaatgcaggaaaggaaagtgtatgattaaattagta |
62 |
Q |
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|||||||||||| |||||||| |||||||| | || ||||||||||||| |
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| T |
7476285 |
agaaaatgtgaaataatgcagaaaaggaaactctaagattaaattagta |
7476237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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