View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4041_low_14 (Length: 278)
Name: NF4041_low_14
Description: NF4041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4041_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 181; Significance: 7e-98; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 10 - 198
Target Start/End: Complemental strand, 394504 - 394316
Alignment:
| Q |
10 |
catcatcaacatagtataaaaatttgatttttacaacttttctctagaacccatgattgttcatgaagaataatcaaaacccaccaacgtttttgaataa |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
394504 |
catcatcaacatagtataaaaatttgatttttacaacttttctctagaacccatgattgttcatgaagaataatcaaaacccaccaacgtttttgaataa |
394405 |
T |
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| Q |
110 |
aaatgcattaaacagaaacactccaatataaaaaatttgatttttaaaagttttctgaagaacccattattgttttacgaagaataaac |
198 |
Q |
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| T |
394404 |
aaatgcattaaacagaaacaccccaatataaaaaatttgatttttaaaagttttctcaagaacccattattgttttacgaagaataaac |
394316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 96
Target Start/End: Complemental strand, 394374 - 394304
Alignment:
| Q |
27 |
aaaaatttgatttttacaacttttctctagaacccatgattgttc-atgaagaataatcaaaacccaccaa |
96 |
Q |
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|||||||||||||||| || ||||||| ||||||||| |||||| | ||||||||| ||||||||||||| |
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| T |
394374 |
aaaaatttgatttttaaaagttttctcaagaacccattattgttttacgaagaataaacaaaacccaccaa |
394304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 148; Significance: 4e-78; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 10 - 196
Target Start/End: Complemental strand, 19765054 - 19764867
Alignment:
| Q |
10 |
catcatcaacatagtataaaaatttgatttttacaacttttctctagaacccatgattgttcatgaagaataatcaaaacccaccaacgtttttgaataa |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
19765054 |
catcatcaacatagtataaaaatttgatttttacaacttttttctagaacctatgattgtttatgaagaataatcaaaacccaccaacgtttttgaataa |
19764955 |
T |
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| Q |
110 |
aaatgcattaaacagaaacactccaatataa-aaaatttgatttttaaaagttttctgaagaacccattattgttttacgaagaataa |
196 |
Q |
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| T |
19764954 |
aaatgcattaaacagaaacaccccaatataaaaaaaattgatttttacaagttttctcaagaacccattattgttttatgaagaataa |
19764867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 96
Target Start/End: Complemental strand, 19764923 - 19764853
Alignment:
| Q |
27 |
aaaaatttgatttttacaacttttctctagaacccatgattgttc-atgaagaataatcaaaacccaccaa |
96 |
Q |
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||||| ||||||||||||| ||||||| ||||||||| |||||| ||||||||||||||||||||||||| |
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| T |
19764923 |
aaaaaattgatttttacaagttttctcaagaacccattattgttttatgaagaataatcaaaacccaccaa |
19764853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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