View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4041_low_15 (Length: 260)

Name: NF4041_low_15
Description: NF4041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4041_low_15
NF4041_low_15
[»] chr7 (2 HSPs)
chr7 (19-253)||(26282003-26282241)
chr7 (33-162)||(24805306-24805442)
[»] chr3 (4 HSPs)
chr3 (33-162)||(12413296-12413432)
chr3 (33-162)||(18151296-18151432)
chr3 (161-243)||(18151545-18151627)
chr3 (170-243)||(12413554-12413627)
[»] chr8 (2 HSPs)
chr8 (91-162)||(16239471-16239542)
chr8 (161-243)||(16239655-16239737)
[»] chr6 (1 HSPs)
chr6 (33-162)||(1708607-1708743)
[»] chr5 (2 HSPs)
chr5 (33-162)||(15275684-15275820)
chr5 (161-243)||(15275933-15276015)
[»] chr4 (2 HSPs)
chr4 (91-165)||(1774962-1775036)
chr4 (161-243)||(1775146-1775228)


Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 19 - 253
Target Start/End: Original strand, 26282003 - 26282241
Alignment:
Q  19 gtacctatgccaataaagtgcatttcattt----tcttgtaaaacattcttgaacttgaaatataacatttcatatgctacagcctgtaaaacaacatta 114  Q
    |||||||||| ||||||||| |||||||||    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  26282003 gtacctatgcgaataaagtgtatttcatttaatttcttgtaaaacattcttgaagttgaaatataacatttcatatgctacagcctgtaaaacaacatta 26282102  T
Q  115 atttgttgatcttcagaaaatcgcatttgaagcacatcaacaagattttcagacgctttcacttttcagtatgtatcattcttccaattcgtagaatcac 214  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26282103 atttgtggatcttcagaaaatcgcatttgaagcacatcaacaagattttcagacgctttcacttttcagtatgtatcattcttccaattcgtagaatcac 26282202  T
Q  215 cggtgatttgaaagttttctgaattttctgcctttgcta 253  Q
    | ||||||||||| |||| |||||||||||||| |||||    
T  26282203 cagtgatttgaaatttttttgaattttctgcctctgcta 26282241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 33 - 162
Target Start/End: Complemental strand, 24805442 - 24805306
Alignment:
Q  33 aaagtgcatttcattttcttgtaaaacattcttgaacttgaaatataacatttcatat-------gctacagcctgtaaaacaacattaatttgttgatc 125  Q
    |||||| |||| ||||||||| |||||||||||||| |||||| |||| ||||  ||        |||||||||||||| ||| ||||||||||| ||||    
T  24805442 aaagtgtattttattttcttgaaaaacattcttgaagttgaaaaataagatttattacctcttgagctacagcctgtaagacagcattaatttgtggatc 24805343  T
Q  126 ttcagaaaatcgcatttgaagcacatcaacaagattt 162  Q
     |||||||||||||||||||||||| |||||||||||    
T  24805342 atcagaaaatcgcatttgaagcacagcaacaagattt 24805306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 33 - 162
Target Start/End: Original strand, 12413296 - 12413432
Alignment:
Q  33 aaagtgcatttcattttcttgtaaaacattcttgaacttgaaatataacatttcatat-------gctacagcctgtaaaacaacattaatttgttgatc 125  Q
    |||||| |||| ||||||||| |||||||||||||| |||||| |||| ||||| ||        |||||||||||||| ||| ||||||||||| ||||    
T  12413296 aaagtgtattttattttcttgaaaaacattcttgaagttgaaaaataagatttcttacctcttgagctacagcctgtaagacagcattaatttgtggatc 12413395  T
Q  126 ttcagaaaatcgcatttgaagcacatcaacaagattt 162  Q
     |||||||||||||||||||||||| |||||||||||    
T  12413396 atcagaaaatcgcatttgaagcacaacaacaagattt 12413432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 33 - 162
Target Start/End: Original strand, 18151296 - 18151432
Alignment:
Q  33 aaagtgcatttcattttcttgtaaaacattcttgaacttgaaatataacatttcatat-------gctacagcctgtaaaacaacattaatttgttgatc 125  Q
    |||||| |||| ||||||||| |||||||||||||| |||||| |||| ||||  ||        |||||||||||||| ||| ||||||||||| ||||    
T  18151296 aaagtgtattttattttcttgaaaaacattcttgaagttgaaaaataagatttattacctcttgagctacagcctgtaagacagcattaatttgtggatc 18151395  T
Q  126 ttcagaaaatcgcatttgaagcacatcaacaagattt 162  Q
     |||||||||||||||||||||||| |||||||||||    
T  18151396 atcagaaaatcgcatttgaagcacagcaacaagattt 18151432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 161 - 243
Target Start/End: Original strand, 18151545 - 18151627
Alignment:
Q  161 tttcagacgctttcacttttcagtatgtatcattcttccaattcgtagaatcaccggtgatttgaaagttttctgaattttct 243  Q
    |||||| | ||||||||||| |||||||||||||| ||||||| ||||||||  | |||| |||||| |||||||||||||||    
T  18151545 tttcaggccctttcacttttgagtatgtatcattcatccaatttgtagaatcttcagtgacttgaaaattttctgaattttct 18151627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 170 - 243
Target Start/End: Original strand, 12413554 - 12413627
Alignment:
Q  170 ctttcacttttcagtatgtatcattcttccaattcgtagaatcaccggtgatttgaaagttttctgaattttct 243  Q
    ||||||||||| |||||||||||||| ||||||| ||||||||  | ||||  ||||| |||||||||||||||    
T  12413554 ctttcacttttgagtatgtatcattcgtccaatttgtagaatcttcagtgacgtgaaaattttctgaattttct 12413627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 91 - 162
Target Start/End: Original strand, 16239471 - 16239542
Alignment:
Q  91 gctacagcctgtaaaacaacattaatttgttgatcttcagaaaatcgcatttgaagcacatcaacaagattt 162  Q
    |||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||    
T  16239471 gctacagcctgtaagacaacattaatttgtggatcatcagaaaatcgcatttgaagcacaacaacaagattt 16239542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 161 - 243
Target Start/End: Original strand, 16239655 - 16239737
Alignment:
Q  161 tttcagacgctttcacttttcagtatgtatcattcttccaattcgtagaatcaccggtgatttgaaagttttctgaattttct 243  Q
    |||||| | ||||||||||| |||||||||||||| ||||||| ||||||||  | |||| |||||| |||||||||||||||    
T  16239655 tttcaggccctttcacttttgagtatgtatcattcatccaatttgtagaatcttcagtgacttgaaaattttctgaattttct 16239737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 33 - 162
Target Start/End: Complemental strand, 1708743 - 1708607
Alignment:
Q  33 aaagtgcatttcattttcttgtaaaacattcttgaacttgaaatataacatttcatat-------gctacagcctgtaaaacaacattaatttgttgatc 125  Q
    |||||| |||| ||||||||| |||||||||||||| |||||| |||| ||||  ||        |||||||||||||| ||| ||||||||||| ||||    
T  1708743 aaagtgtattttattttcttgaaaaacattcttgaagttgaaaaataagatttattacctcttgagctacagcctgtaagacagcattaatttgtggatc 1708644  T
Q  126 ttcagaaaatcgcatttgaagcacatcaacaagattt 162  Q
     |||||||||||||||||||||||| |||||||||||    
T  1708643 atcagaaaatcgcatttgaagcacagcaacaagattt 1708607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 33 - 162
Target Start/End: Original strand, 15275684 - 15275820
Alignment:
Q  33 aaagtgcatttcattttcttgtaaaacattcttgaacttgaaatataacatttcatat-------gctacagcctgtaaaacaacattaatttgttgatc 125  Q
    |||||| |||| ||||||||| |||||||||||||| |||||| |||| ||||  ||        |||||||||||||| ||| ||||||||||| ||||    
T  15275684 aaagtgtattttattttcttgaaaaacattcttgaagttgaaaaataagatttattacctcttgagctacagcctgtaagacagcattaatttgtggatc 15275783  T
Q  126 ttcagaaaatcgcatttgaagcacatcaacaagattt 162  Q
     |||||||||||||||||||||||| |||||||||||    
T  15275784 atcagaaaatcgcatttgaagcacagcaacaagattt 15275820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 161 - 243
Target Start/End: Original strand, 15275933 - 15276015
Alignment:
Q  161 tttcagacgctttcacttttcagtatgtatcattcttccaattcgtagaatcaccggtgatttgaaagttttctgaattttct 243  Q
    |||||| | ||||||||||| |||||||||||||| ||||||| ||||||||  | |||| |||||| |||||||||||||||    
T  15275933 tttcaggccctttcacttttgagtatgtatcattcatccaatttgtagaatcttcagtgacttgaaaattttctgaattttct 15276015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 91 - 165
Target Start/End: Original strand, 1774962 - 1775036
Alignment:
Q  91 gctacagcctgtaaaacaacattaatttgttgatcttcagaaaatcgcatttgaagcacatcaacaagattttca 165  Q
    |||||||||||||| ||| ||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||    
T  1774962 gctacagcctgtaagacatcattaatttgtggatcatcagaaaatcgcatttgaagcacaacaacaagattttca 1775036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 161 - 243
Target Start/End: Original strand, 1775146 - 1775228
Alignment:
Q  161 tttcagacgctttcacttttcagtatgtatcattcttccaattcgtagaatcaccggtgatttgaaagttttctgaattttct 243  Q
    |||||| | ||||||||||| |||||||||||||| ||||||| ||||||||  | |||| |||| | |||||||||||||||    
T  1775146 tttcaggccctttcacttttgagtatgtatcattcatccaatttgtagaatcttcagtgacttgagaattttctgaattttct 1775228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University