View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4041_low_16 (Length: 252)
Name: NF4041_low_16
Description: NF4041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4041_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 46666997 - 46667230
Alignment:
| Q |
1 |
attattcaacaatagtgaaaagcaacatataatggcagatcgggtactatactcttgctttcttaataataactatactattattttttatgtcattcat |
100 |
Q |
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| T |
46666997 |
attattcaacaatagtgaaaagcaacatataatggcagatcgggtactatactcttgctttcttaataataactatactattattttttatgtcattcat |
46667096 |
T |
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| Q |
101 |
attgtgaactaaccttttaattaaattgactatatatatctattaatacaaaatattgaaacgtgcagatgtttgatctatttgatgtcaagaagaaagg |
200 |
Q |
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| T |
46667097 |
attgtgaactaaccttttaattaaattgactatatctatctattaatacaaaatattgaaacgtgcagatctttgatctatttgatgtcaagaagaaagg |
46667196 |
T |
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| Q |
201 |
aaagatttattttgatgacttcgttagatcactt |
234 |
Q |
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| T |
46667197 |
aaagatttattttgatgacttcgttagatcactt |
46667230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 41110972 - 41110903
Alignment:
| Q |
161 |
acgtgcagatgtttgatctatttgatgtcaagaagaaaggaaagatttattttgatgacttcgttagatc |
230 |
Q |
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| T |
41110972 |
acgtgcagatctttgatctatttgatgtcaagaggaagggcgttattgattttgatgacttcgttagatc |
41110903 |
T |
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