View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4041_low_4 (Length: 433)
Name: NF4041_low_4
Description: NF4041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4041_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 393; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 19 - 423
Target Start/End: Original strand, 1681022 - 1681426
Alignment:
| Q |
19 |
aaacacacttgcttgcttccaaatcactcaatgtattttccaccaactcagagaggtaatcagaaagatgcctgtgactaactccttgtaaattgtaata |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1681022 |
aaacacacttgcttgcttccaaatcactcaatgtattttccaccaactcagagaggtaatcagaaagatgcctgtgactaactccttgtaaattgtaata |
1681121 |
T |
|
| Q |
119 |
gttgggattctgggtgagacgcctgtacatgaatgtccatgtaagataatctacagcgtcttgcttgttttcaataattccagcaacaatttcagcattc |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1681122 |
gttgggattctgggtgagacgcctgtacatgaatgtccatgtaagataatctacatcgtcttgcttgttttcaataattccagcaacaatttcagcattc |
1681221 |
T |
|
| Q |
219 |
aaattatcatgtaaaaagtgatgaagatgactttcaaccgggaatgcttcgaacaaaaactttttgtaatactccttagaaggtgcatggcataagatga |
318 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1681222 |
atattatcatgtaaaaagtgatgaagatgactttcaaccgggaatgcttcgaacaaaaactttttgtaatactccttagaaggtgcatggcataagatga |
1681321 |
T |
|
| Q |
319 |
cacactttccagaatggtccaccaaaggacgactggcatgacccatcatctgcagaagatcagtaacagggtagtctgtctgtgcattccccccatcata |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
1681322 |
cacactttccagaatggtccaccaaaggacgactggcatgacccatcatctgcagaagatcagtaacagggtagtctgtctgtgcattctccccatcata |
1681421 |
T |
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| Q |
419 |
gtatt |
423 |
Q |
| |
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||||| |
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| T |
1681422 |
gtatt |
1681426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 19 - 421
Target Start/End: Complemental strand, 2799706 - 2799304
Alignment:
| Q |
19 |
aaacacacttgcttgcttccaaatcactcaatgtattttccaccaactcagagaggtaatcagaaagatgcctgtgactaactccttgtaaattgtaata |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2799706 |
aaacacacttgcttgcttccaaatcactcaatgtattttccaccaactcagagaggtaatcagaaagatgcctgtgactaactccttgtaaattgtaata |
2799607 |
T |
|
| Q |
119 |
gttgggattctgggtgagacgcctgtacatgaatgtccatgtaagataatctacagcgtcttgcttgttttcaataattccagcaacaatttcagcattc |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2799606 |
gttgggattctgggtgagacgcctgtacatgaatgtccatgtaagataatcaacaacgtcttgcttgttttcaataattccagcaacaatttcagcattc |
2799507 |
T |
|
| Q |
219 |
aaattatcatgtaaaaagtgatgaagatgactttcaaccgggaatgcttcgaacaaaaactttttgtaatactccttagaaggtgcatggcataagatga |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2799506 |
aaattatcatgtaaaaagtgatgaagatgactttcaaccgggaatgcttcgaacaaaaactttttgtaatactccttagaaggtgcatggcataagatga |
2799407 |
T |
|
| Q |
319 |
cacactttccagaatggtccaccaaaggacgactggcatgacccatcatctgcagaagatcagtaacagggtagtctgtctgtgcattccccccatcata |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
2799406 |
cacactttccagaatggtccaccaaaggacgactggcatgacccatcatctgcagaagatcagtaacagggtagtctgtctgtgcattctccccatcata |
2799307 |
T |
|
| Q |
419 |
gta |
421 |
Q |
| |
|
||| |
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|
| T |
2799306 |
gta |
2799304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 19 - 407
Target Start/End: Complemental strand, 29268882 - 29268494
Alignment:
| Q |
19 |
aaacacacttgcttgcttccaaatcactcaatgtattttccaccaactcagagaggtaatcagaaagatgcctgtgactaactccttgtaaattgtaata |
118 |
Q |
| |
|
||||||||||||||||||| || || ||||||||||||||||||| ||| ||||||| ||||||||||| |||||||| |||||||||||||||||||| |
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| T |
29268882 |
aaacacacttgcttgcttctaagtcgctcaatgtattttccaccatctctgagaggtggtcagaaagatgtctgtgacttactccttgtaaattgtaata |
29268783 |
T |
|
| Q |
119 |
gttgggattctgggtgagacgcctgtacatgaatgtccatgtaagataatctacagcgtcttgcttgttttcaataattccagcaacaatttcagcattc |
218 |
Q |
| |
|
|||||||||||| ||||| | |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||| |
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| T |
29268782 |
gttgggattctgtgtgagcctcctgtacatgaatgtccatgtaagataatcaacagcatcttgcttgttttcaataatcccagcaacaatttcagcattc |
29268683 |
T |
|
| Q |
219 |
aaattatcatgtaaaaagtgatgaagatgactttcaaccgggaatgcttcgaacaaaaactttttgtaatactccttagaaggtgcatggcataagatga |
318 |
Q |
| |
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|| || || || || |||||||||||||| |||||||| ||||||||||| ||| |||||| ||||| ||||| || |||||| ||||||||||||| |
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| T |
29268682 |
aagttgtcgtgcaagaagtgatgaagatggctttcaactgggaatgcttcatacagaaacttcttgtagtactctttgcgaggtgcgtggcataagatga |
29268583 |
T |
|
| Q |
319 |
cacactttccagaatggtccaccaaaggacgactggcatgacccatcatctgcagaagatcagtaacagggtagtctgtctgtgcattc |
407 |
Q |
| |
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|||| |||||||||| ||| || |||||||| ||||||||||||||||| ||||| | ||||||||||||||| |||||||| |||||| |
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| T |
29268582 |
cacattttccagaattgtctactaaaggacggctggcatgacccatcatttgcagcaaatcagtaacagggtaatctgtctgggcattc |
29268494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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