View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4041_low_5 (Length: 395)

Name: NF4041_low_5
Description: NF4041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4041_low_5
NF4041_low_5
[»] chr7 (15 HSPs)
chr7 (16-379)||(39547331-39547694)
chr7 (16-379)||(39338627-39338990)
chr7 (16-379)||(39353470-39353833)
chr7 (16-379)||(39537866-39538236)
chr7 (130-379)||(39365980-39366229)
chr7 (17-361)||(1084669-1085013)
chr7 (129-377)||(39564223-39564471)
chr7 (165-377)||(39589308-39589520)
chr7 (127-379)||(39622038-39622290)
chr7 (169-377)||(39575074-39575282)
chr7 (16-80)||(39366349-39366413)
chr7 (302-364)||(1085062-1085123)
chr7 (16-82)||(39563962-39564028)
chr7 (193-365)||(42171837-42172009)
chr7 (172-239)||(42133023-42133090)
[»] chr2 (5 HSPs)
chr2 (172-362)||(44233986-44234176)
chr2 (172-362)||(44223164-44223354)
chr2 (172-362)||(44211002-44211192)
chr2 (201-275)||(43457586-43457660)
chr2 (18-65)||(44210808-44210855)
[»] chr1 (2 HSPs)
chr1 (172-323)||(2160857-2161008)
chr1 (192-365)||(41687667-41687840)
[»] chr3 (1 HSPs)
chr3 (169-275)||(49773219-49773325)
[»] chr4 (4 HSPs)
chr4 (172-362)||(2877177-2877367)
chr4 (196-331)||(2886975-2887110)
chr4 (196-269)||(2897266-2897339)
chr4 (24-61)||(2887286-2887323)
[»] chr8 (1 HSPs)
chr8 (204-275)||(4501297-4501368)
[»] chr5 (1 HSPs)
chr5 (205-350)||(29776997-29777142)


Alignment Details
Target: chr7 (Bit Score: 324; Significance: 0; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 16 - 379
Target Start/End: Original strand, 39547331 - 39547694
Alignment:
Q  16 gtttcagttccacaagttccattacttcctcaatgaacatctacaagcataagtcattttcaaactttgacataataattccaatgaatggtaaaatccc 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |    
T  39547331 gtttcagttccacaagttccattacttcctcaatgaacatctacaagcataagtcattttcaaactttaacataataattccaatgaatggtaaaatctc 39547430  T
Q  116 aagtgattaaaatactaacctttctggtttcagcattgatgtcaggggacaatcggagccatgctgaatagagcaaagattcatagacagtaacatgagg 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39547431 aagtgattaaaatactaacctttctggtttcagcattgatgtcaggggacaatcggagccatgctgaatagagcaaagattcatagacagtaacatgagg 39547530  T
Q  216 agaatggatatcagtttgctcacagtatcctgaaattcttgcaaaggtttcttgcttctttagatatccagatattgtgatgttcccaccaatatatcca 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  39547531 agaatggatatcagtttgctcacagtatcctgaaattcttgcaaaggtatcttgcttctttggatagccagatattgtgatgttcccaccaatatatcca 39547630  T
Q  316 ccagtttttctaccagaaagcacatccatcagagttgttttgccagcaccggtgacgcccatca 379  Q
    |||||||||||||||||||| ||||||||||||||||||||||| ||||| || || |||||||    
T  39547631 ccagtttttctaccagaaagtacatccatcagagttgttttgcctgcaccagtcacacccatca 39547694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 16 - 379
Target Start/End: Complemental strand, 39338990 - 39338627
Alignment:
Q  16 gtttcagttccacaagttccattacttcctcaatgaacatctacaagcataagtcattttcaaactttgacataataattccaatgaatggtaaaatccc 115  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||  || ||||||||||| | |||||||||||| |    
T  39338990 gtttcagttccacaagttccatgacttcctcaatgaacatcttcaagcataagtcattttcaaacttaaacttaataattccagttaatggtaaaatctc 39338891  T
Q  116 aagtgattaaaatactaacctttctggtttcagcattgatgtcaggggacaatcggagccatgctgaatagagcaaagattcatagacagtaacatgagg 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39338890 aagtgattaaaatactaacctttctggtttcagcattgatgtcaggggacaatcggagccatgctgaatagagcaaagattcatagacagtaacatgagg 39338791  T
Q  216 agaatggatatcagtttgctcacagtatcctgaaattcttgcaaaggtttcttgcttctttagatatccagatattgtgatgttcccaccaatatatcca 315  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || | || || ||| |||||||||||||||||||||||    
T  39338790 agaatggatatcagtttgctcacagtatccagaaattcttgcaaaggtttcttgcttctttggaaagccggaaattttgatgttcccaccaatatatcca 39338691  T
Q  316 ccagtttttctaccagaaagcacatccatcagagttgttttgccagcaccggtgacgcccatca 379  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  39338690 ccagtttttctaccagaaagcacatccatcagagttgttttcccagcaccggtgatgcccatca 39338627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 16 - 379
Target Start/End: Complemental strand, 39353833 - 39353470
Alignment:
Q  16 gtttcagttccacaagttccattacttcctcaatgaacatctacaagcataagtcattttcaaactttgacataataattccaatgaatggtaaaatccc 115  Q
    |||||||||||||||||||||| |||||||||| |||||||| |||| |||||||||||||||||||  ||||||||||||||||||||||||||||| |    
T  39353833 gtttcagttccacaagttccatgacttcctcaacgaacatcttcaagtataagtcattttcaaacttaaacataataattccaatgaatggtaaaatctc 39353734  T
Q  116 aagtgattaaaatactaacctttctggtttcagcattgatgtcaggggacaatcggagccatgctgaatagagcaaagattcatagacagtaacatgagg 215  Q
    ||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||| || ||||||||||||||||||||||||||||| |||    
T  39353733 aagtgattaaagtactaacctttctggtttcagcattgatgtctggggacaaccggagccatgttggatagagcaaagattcatagacagtaacataagg 39353634  T
Q  216 agaatggatatcagtttgctcacagtatcctgaaattcttgcaaaggtttcttgcttctttagatatccagatattgtgatgttcccaccaatatatcca 315  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||| || || |||||||||||||||||||||||||||    
T  39353633 agaatggatatcagtttgctcacagtatccagaaattcttgcaaaggtttcttgcttttttggatagccggaaattgtgatgttcccaccaatatatcca 39353534  T
Q  316 ccagtttttctaccagaaagcacatccatcagagttgttttgccagcaccggtgacgcccatca 379  Q
    || |||||||||||||||||||||||||| ||||||||||| |||||||| |||| ||||||||    
T  39353533 ccggtttttctaccagaaagcacatccattagagttgtttttccagcaccagtgatgcccatca 39353470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 16 - 379
Target Start/End: Original strand, 39537866 - 39538236
Alignment:
Q  16 gtttcagttccacaagttccattacttcctcaatgaacatctacaagcataagtcattttcaaactttga--cata-ataattccaatgaa-----tggt 107  Q
    |||||||||||||||||||||| ||||| ||||||||||||| |||||||| |||| |||||||||| |   |||  ||||  | ||||||     | ||    
T  39537866 gtttcagttccacaagttccatgacttcttcaatgaacatctgcaagcataggtcagtttcaaacttagcagcattgataaaac-aatgaagtagttcgt 39537964  T
Q  108 aaaatcccaagtgattaaaatactaacctttctggtttcagcattgatgtcaggggacaatcggagccatgctgaatagagcaaagattcatagacagta 207  Q
    ||||||  |||||||||||||||||||||| |||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||    
T  39537965 aaaatctgaagtgattaaaatactaaccttcctggtttcagcattgatgtctggagacaaccggagccatgctgaatagagcaaagattcatagacagta 39538064  T
Q  208 acatgaggagaatggatatcagtttgctcacagtatcctgaaattcttgcaaaggtttcttgcttctttagatatccagatattgtgatgttcccaccaa 307  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||| |||||||||||||||||||    
T  39538065 acataaggagaatggatatcagtttgctcacagtatcctgaaattcttgcaaaggtatcttgcttctttggatagccagaaattgtgatgttcccaccaa 39538164  T
Q  308 tatatccaccagtttttctaccagaaagcacatccatcagagttgttttgccagcaccggtgacgcccatca 379  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||    
T  39538165 tatatccaccagtttttctaccagaaagcacatccatcagagttgttttgcctgcacccgtgacgcccatca 39538236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 130 - 379
Target Start/End: Complemental strand, 39366229 - 39365980
Alignment:
Q  130 ctaacctttctggtttcagcattgatgtcaggggacaatcggagccatgctgaatagagcaaagattcatagacagtaacatgaggagaatggatatcag 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  39366229 ctaacctttctggtttcagcattgatgtcaggggacaatcggagccatgctgaatagagtaaagattcatagacagtaacatgaggagaatggatatcag 39366130  T
Q  230 tttgctcacagtatcctgaaattcttgcaaaggtttcttgcttctttagatatccagatattgtgatgttcccaccaatatatccaccagtttttctacc 329  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  39366129 tttgctcgcagtatccagaaattcttgcaaaggtttcttgcttctttggatagccagatattgtgatgttcccaccaatatatccaccagtttttctacc 39366030  T
Q  330 agaaagcacatccatcagagttgttttgccagcaccggtgacgcccatca 379  Q
    ||||||||||||||||||||||||||||||||||||||| || |||||||    
T  39366029 agaaagcacatccatcagagttgttttgccagcaccggtcacacccatca 39365980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 17 - 361
Target Start/End: Original strand, 1084669 - 1085013
Alignment:
Q  17 tttcagttccacaagttccattacttcctcaatgaacatctacaagcataagtcattttcaaactttgacataataattccaatgaatggtaaaatccca 116  Q
    ||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||| |||||||| ||||| ||||||||||||||||||||||| ||    
T  1084669 tttcagttccacaagttccatgacttcctcaatgaacatctataagcataattcattt-caaactttaacatagtaattccaatgaatggtaaaatctca 1084767  T
Q  117 agtgattaaaatactaacctttctggtttcagcattgatgtcaggggacaatcggagccatgctgaatagagcaaagattcatagacagtaacatgagga 216  Q
    | |||||||||| |||||||| |||||||||||||| ||||| | || |||||||||||||||||||||||||||||| || |||||||||| |||||||    
T  1084768 attgattaaaatgctaaccttcctggtttcagcattaatgtccgaggtcaatcggagccatgctgaatagagcaaagactcgtagacagtaaaatgagga 1084867  T
Q  217 gaatggatatcagtttgctcacagtatcctgaaattcttgcaaaggtttcttgc--ttctttagatatccagatattgtgatgttcccaccaatatatcc 314  Q
    |||||||||||  |||||||||||||||| |||||||||| ||| |||||||||  |||| | |||| ||||| ||| ||||||||||||||||||||||    
T  1084868 gaatggatatctatttgctcacagtatccagaaattcttgtaaatgtttcttgcttttctatggatagccagaaattatgatgttcccaccaatatatcc 1084967  T
Q  315 accagtttttctaccagaaagcacatccatcagagttgttttgccag 361  Q
    | ||||||||||||||| |||||||||||||| ||||||||||||||    
T  1084968 atcagtttttctaccag-aagcacatccatcaaagttgttttgccag 1085013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 129 - 377
Target Start/End: Original strand, 39564223 - 39564471
Alignment:
Q  129 actaacctttctggtttcagcattgatgtcaggggacaatcggagccatgctgaatagagcaaagattcatagacagtaacatgaggagaatggatatca 228  Q
    |||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  39564223 actaacctttctagtttcagcattgatgtctggggacaaccggagccatgctgaatagagcaaagattcatagacagtaacataaggagagtggatatca 39564322  T
Q  229 gtttgctcacagtatcctgaaattcttgcaaaggtttcttgcttctttagatatccagatattgtgatgttcccaccaatatatccaccagtttttctac 328  Q
     ||||||||||||| || |||||||||||||||||||||||||||||| || | || || |||||||||||||||||||||||||| || ||||| ||||    
T  39564323 ttttgctcacagtacccagaaattcttgcaaaggtttcttgcttctttggaaagccggaaattgtgatgttcccaccaatatatcctccggttttcctac 39564422  T
Q  329 cagaaagcacatccatcagagttgttttgccagcaccggtgacgcccat 377  Q
    |||||||||||||||||||||||||||||||||||||||| || |||||    
T  39564423 cagaaagcacatccatcagagttgttttgccagcaccggtcacacccat 39564471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 165 - 377
Target Start/End: Original strand, 39589308 - 39589520
Alignment:
Q  165 caatcggagccatgctgaatagagcaaagattcatagacagtaacatgaggagaatggatatcagtttgctcacagtatcctgaaattcttgcaaaggtt 264  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||| |||    
T  39589308 caatcgaagccatgctgaatagagcaaagattcatatacagtaacatgaggagagtggatatcattttgctcacagtatccagaaattcttgcaaatgtt 39589407  T
Q  265 tcttgcttctttagatatccagatattgtgatgttcccaccaatatatccaccagtttttctaccagaaagcacatccatcagagttgttttgccagcac 364  Q
    |||||||||||  |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||| |||||||    
T  39589408 tcttgcttcttaggatatccagaaattgtgatggtcccaccaatatatccaccagtttttctaccagaaagcacatccaacaaagtagtttttccagcac 39589507  T
Q  365 cggtgacgcccat 377  Q
    | |||||||||||    
T  39589508 ccgtgacgcccat 39589520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 127 - 379
Target Start/End: Original strand, 39622038 - 39622290
Alignment:
Q  127 atactaacctttctggtttcagcattgatgtcaggggacaatcggagccatgctgaatagagcaaagattcatagacagtaacatgaggagaatggatat 226  Q
    |||| |||||| ||||||||||||||||| || |  ||||||||||||||||| ||| ||||||| |||||||| |||||||||| ||||||||||||||    
T  39622038 ataccaaccttcctggtttcagcattgatttctgcagacaatcggagccatgccgaaaagagcaatgattcatatacagtaacataaggagaatggatat 39622137  T
Q  227 cagtttgctcacagtatcctgaaattcttgcaaaggtttcttgcttctttagatatccagatattgtgatgttcccaccaatatatccaccagtttttct 326  Q
     | |||| |||||||||||  ||| ||||||||||||||| |||||||||  ||| ||||| ||||||||| |||||||||||||||| |  ||||||||    
T  39622138 aattttgttcacagtatccacaaactcttgcaaaggtttcctgcttctttgaatagccagaaattgtgatggtcccaccaatatatcctctggtttttct 39622237  T
Q  327 accagaaagcacatccatcagagttgttttgccagcaccggtgacgcccatca 379  Q
     ||||  || ||||||||||||||||||||||||||||| || || |||||||    
T  39622238 tccagctagtacatccatcagagttgttttgccagcaccagtcacacccatca 39622290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 169 - 377
Target Start/End: Original strand, 39575074 - 39575282
Alignment:
Q  169 cggagccatgctgaatagagcaaagattcatagacagtaacatgaggagaatggatatcagtttgctcacagtatcctgaaattcttgcaaaggtttctt 268  Q
    |||||||||||||||||||||||||| |||||||| |||| ||||||||| || |||||| |||||||||||||||| ||||||||||||||||||||||    
T  39575074 cggagccatgctgaatagagcaaagactcatagaccgtaatatgaggagagtgtatatcattttgctcacagtatccggaaattcttgcaaaggtttctt 39575173  T
Q  269 gcttctttagatatccagatattgtgatgttcccaccaatatatccaccagtttttctaccagaaagcacatccatcagagttgttttgccagcaccggt 368  Q
    |||| ||  |||  || || | |||||||||||||| ||||||||| ||| |||| ||||||| ||| |||||||||| |||||||||||||||||| ||    
T  39575174 gctttttgggatgcccggaaactgtgatgttcccactaatatatcccccacttttcctaccagcaagtacatccatcaaagttgttttgccagcaccagt 39575273  T
Q  369 gacgcccat 377  Q
    ||| |||||    
T  39575274 gacacccat 39575282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 39366413 - 39366349
Alignment:
Q  16 gtttcagttccacaagttccattacttcctcaatgaacatctacaagcataagtcattttcaaac 80  Q
    |||||||||||||||||||||| ||||||||||| ||||||| ||||||| ||||| ||||||||    
T  39366413 gtttcagttccacaagttccatgacttcctcaataaacatctgcaagcattagtcagtttcaaac 39366349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 302 - 364
Target Start/End: Original strand, 1085062 - 1085123
Alignment:
Q  302 caccaatatatccaccagtttttctaccagaaagcacatccatcagagttgttttgccagcac 364  Q
    ||||||| |||||| ||||||||||||||||| |||||||||||| |||||||||||||||||    
T  1085062 caccaatgtatccatcagtttttctaccagaa-gcacatccatcaaagttgttttgccagcac 1085123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 39563962 - 39564028
Alignment:
Q  16 gtttcagttccacaagttccattacttcctcaatgaacatctacaagcataagtcattttcaaactt 82  Q
    |||||||||||||||||||||| |||||||||| |||||||| ||| ||| | | | ||||||||||    
T  39563962 gtttcagttccacaagttccatgacttcctcaacgaacatctgcaaccattaattagtttcaaactt 39564028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 365
Target Start/End: Original strand, 42171837 - 42172009
Alignment:
Q  193 gattcatagacagtaacatgaggagaatggatatcagtttgctcacagtatcctgaaattcttgcaaaggtttcttgcttctttagatatccagatattg 292  Q
    ||||||||||||||||||||||||||||| |||||| | || || ||||| ||   |||||  || || |||||||| |||||| | || || |||||      
T  42171837 gattcatagacagtaacatgaggagaatgaatatcattctgttcgcagtaaccactaattcgggcgaatgtttcttggttcttttggtaacctgatatgc 42171936  T
Q  293 tgatgttcccaccaatatatccaccagtttttctaccagaaagcacatccatcagagttgttttgccagcacc 365  Q
    | || || ||  |||| ||||||||||||||||| ||||  |  |||||||| || ||||| || ||||||||    
T  42171937 taatatttccttcaatgtatccaccagtttttcttccagctaatacatccatgagtgttgtcttcccagcacc 42172009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 172 - 239
Target Start/End: Original strand, 42133023 - 42133090
Alignment:
Q  172 agccatgctgaatagagcaaagattcatagacagtaacatgaggagaatggatatcagtttgctcaca 239  Q
    |||||||| ||| | || ||||||||||||||||| ||||  |||||||| |||||| ||||||||||    
T  42133023 agccatgcagaaaatagtaaagattcatagacagttacatagggagaatgaatatcattttgctcaca 42133090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 172 - 362
Target Start/End: Original strand, 44233986 - 44234176
Alignment:
Q  172 agccatgctgaatagagcaaagattcatagacagtaacatgaggagaatggatatcagtttgctcacagtatcctgaaattcttgcaaaggtttcttgct 271  Q
    ||||| ||||| || |||||||| ||||| || ||||||||||| |||||||||||| | ||||||||||| || || ||||| ||||| ||||||||||    
T  44233986 agccacgctgagtaaagcaaagactcataaactgtaacatgaggtgaatggatatcattctgctcacagtaaccggagattctagcaaatgtttcttgct 44234085  T
Q  272 tctttagatatccagatattgtgatgttcccaccaatatatccaccagtttttctaccagaaagcacatccatcagagttgttttgccagc 362  Q
    | ||  |||| ||||| |   ||||||  ||| ||||||||||||| ||||| |||||||  || |||||||||||||||||||| |||||    
T  44234086 ttttaggatacccagaaaccttgatgtctccatcaatatatccacctgttttcctaccagccagaacatccatcagagttgttttaccagc 44234176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 172 - 362
Target Start/End: Original strand, 44223164 - 44223354
Alignment:
Q  172 agccatgctgaatagagcaaagattcatagacagtaacatgaggagaatggatatcagtttgctcacagtatcctgaaattcttgcaaaggtttcttgct 271  Q
    ||||| || ||||| |||||||| ||||| || |||||||| || |||||||||||| | ||||||||||| || |||||||| ||||| ||||||||||    
T  44223164 agccacgccgaataaagcaaagactcataaactgtaacatgcggtgaatggatatcattctgctcacagtagccagaaattctagcaaatgtttcttgct 44223263  T
Q  272 tctttagatatccagatattgtgatgttcccaccaatatatccaccagtttttctaccagaaagcacatccatcagagttgttttgccagc 362  Q
    | ||  | || ||||| |   ||||||  ||| ||||||||||||| ||||| |||||||  || |||||||||||||||||||| |||||    
T  44223264 ttttagggtacccagaaaccttgatgtctccatcaatatatccacctgttttcctaccagccagaacatccatcagagttgttttaccagc 44223354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 172 - 362
Target Start/End: Original strand, 44211002 - 44211192
Alignment:
Q  172 agccatgctgaatagagcaaagattcatagacagtaacatgaggagaatggatatcagtttgctcacagtatcctgaaattcttgcaaaggtttcttgct 271  Q
    ||||||||||| || || |  |||||||| || ||||||||||| ||||| |||||| | || |||||||| || || ||||| ||||| ||||||||||    
T  44211002 agccatgctgagtaaagaagggattcataaactgtaacatgaggtgaatgaatatcattctgttcacagtagccagatattctagcaaatgtttcttgct 44211101  T
Q  272 tctttagatatccagatattgtgatgttcccaccaatatatccaccagtttttctaccagaaagcacatccatcagagttgttttgccagc 362  Q
    | ||  | || ||||| |   ||||||  ||| ||||||||||||| ||||| |||||||  || |||||||||||||||||||| |||||    
T  44211102 ttttagggtacccagaaaccttgatgtctccatcaatatatccacctgttttcctaccagccagaacatccatcagagttgttttaccagc 44211192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 201 - 275
Target Start/End: Original strand, 43457586 - 43457660
Alignment:
Q  201 gacagtaacatgaggagaatggatatcagtttgctcacagtatcctgaaattcttgcaaaggtttcttgcttctt 275  Q
    ||||||||| || || ||||||||||| ||||| || |||||||| |||||||||||||| |||||||| |||||    
T  43457586 gacagtaacttgtggtgaatggatatcggtttgttcgcagtatccagaaattcttgcaaatgtttcttgattctt 43457660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 44210808 - 44210855
Alignment:
Q  18 ttcagttccacaagttccattacttcctcaatgaacatctacaagcat 65  Q
    ||||| |||||||| ||||||||||||||||| ||||||| |||||||    
T  44210808 ttcagctccacaagatccattacttcctcaataaacatctgcaagcat 44210855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 172 - 323
Target Start/End: Original strand, 2160857 - 2161008
Alignment:
Q  172 agccatgctgaatagagcaaagattcatagacagtaacatgaggagaatggatatcagtttgctcacagtatcctgaaattcttgcaaaggtttcttgct 271  Q
    |||||||| ||||| | |||||||||||| || ||||||| ||| ||||||||||||  |||||| || ||||| || || |  ||||| |||| ||| |    
T  2160857 agccatgccgaatataacaaagattcataaactgtaacattaggtgaatggatatcaaattgctcgcaatatcccgatatgcgagcaaatgttttttgat 2160956  T
Q  272 tctttagatatccagatattgtgatgttcccaccaatatatccaccagtttt 323  Q
    ||||| |||| || |||||||||||||| ||| |||||||||||||||||||    
T  2160957 tctttggatagccggatattgtgatgtttccatcaatatatccaccagtttt 2161008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 365
Target Start/End: Original strand, 41687667 - 41687840
Alignment:
Q  192 agattcatagacagtaacatgaggagaatggatatcagtttgctcacagtatcctgaaattcttgcaaaggtttcttgcttctttagatatccagatatt 291  Q
    |||||||||||| |||| ||  ||||| || |||||  |||| |||||||||||    |||| |||||| ||| |||| |||||| |||| |||||||      
T  41687667 agattcatagactgtaagatttggagagtgaatatcgttttgttcacagtatccactgattcgtgcaaaagttgcttggttctttggataaccagatacg 41687766  T
Q  292 gtgatgttcccaccaatatatccaccagtttttctaccagaaagcacatccatcagagttgttttgccagcacc 365  Q
     | ||| ||||  ||||||| |||||||||||||| |||| ||| |||||||| || || ||||| ||||||||    
T  41687767 ctaatgctcccttcaatataaccaccagtttttcttccagcaagaacatccattagtgtggtttttccagcacc 41687840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 169 - 275
Target Start/End: Complemental strand, 49773325 - 49773219
Alignment:
Q  169 cggagccatgctgaatagagcaaagattcatagacagtaacatgaggagaatggatatcagtttgctcacagtatcctgaaattcttgcaaaggtttctt 268  Q
    ||||||||||| ||||| |  | ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| || |  | ||| |||||||    
T  49773325 cggagccatgcagaataaacaagagattcatagacagtaacatggggagagtggatatcagtttgctcacagtatcctgatatccgagaaaatgtttctt 49773226  T
Q  269 gcttctt 275  Q
    |||||||    
T  49773225 gcttctt 49773219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 172 - 362
Target Start/End: Complemental strand, 2877367 - 2877177
Alignment:
Q  172 agccatgctgaatagagcaaagattcatagacagtaacatgaggagaatggatatcagtttgctcacagtatcctgaaattcttgcaaaggtttcttgct 271  Q
    ||||| |||||||| || || || |||||||||||||| ||||| || ||||||||| | |||||||| || || || ||||| ||||| ||||||||||    
T  2877367 agccaagctgaatacagtaaggactcatagacagtaacttgaggggagtggatatcattctgctcacaatagccagagattctagcaaatgtttcttgct 2877268  T
Q  272 tctttagatatccagatattgtgatgttcccaccaatatatccaccagtttttctaccagaaagcacatccatcagagttgttttgccagc 362  Q
    | ||  | || ||||| ||| | ||| ||||| ||||||| |||| |||||| |||||||  |  |||||||||| ||| ||||| |||||    
T  2877267 ttttagggtaaccagaaatttttatgctcccatcaatataaccactagttttcctaccagccaatacatccatcaaagtagttttaccagc 2877177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 196 - 331
Target Start/End: Complemental strand, 2887110 - 2886975
Alignment:
Q  196 tcatagacagtaacatgaggagaatggatatcagtttgctcacagtatcctgaaattcttgcaaaggtttcttgcttctttagatatccagatattgtga 295  Q
    ||||||||||||||||||||||||||||||||| | |||||||| || || || ||||  ||||| |||||||| || ||  | || ||||| ||| | |    
T  2887110 tcatagacagtaacatgaggagaatggatatcattctgctcacaataaccagagattcgagcaaacgtttcttgttttttagggtacccagaaattttta 2887011  T
Q  296 tgttcccaccaatatatccaccagtttttctaccag 331  Q
    || ||||  ||||||| ||||||||||| |||||||    
T  2887010 tgctcccgtcaatataaccaccagttttcctaccag 2886975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 269
Target Start/End: Original strand, 2897266 - 2897339
Alignment:
Q  196 tcatagacagtaacatgaggagaatggatatcagtttgctcacagtatcctgaaattcttgcaaaggtttcttg 269  Q
    ||||||||||||||||||||||||||||||||| | |||||||| || || || ||||  ||||| ||||||||    
T  2897266 tcatagacagtaacatgaggagaatggatatcattctgctcacaataaccagagattcgagcaaacgtttcttg 2897339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 2887323 - 2887286
Alignment:
Q  24 tccacaagttccattacttcctcaatgaacatctacaa 61  Q
    ||||| |||||||| |||||||||||||||||||||||    
T  2887323 tccactagttccatgacttcctcaatgaacatctacaa 2887286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 204 - 275
Target Start/End: Complemental strand, 4501368 - 4501297
Alignment:
Q  204 agtaacatgaggagaatggatatcagtttgctcacagtatcctgaaattcttgcaaaggtttcttgcttctt 275  Q
    |||||| ||||| ||||| ||||||||||| ||||| || || |||| |||||||||||||||||| |||||    
T  4501368 agtaacttgaggtgaatgaatatcagtttgttcacaataaccagaaactcttgcaaaggtttcttggttctt 4501297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 350
Target Start/End: Complemental strand, 29777142 - 29776997
Alignment:
Q  205 gtaacatgaggagaatggatatcagtttgctcacagtatcctgaaattcttgcaaaggtttcttgcttctttagatatccagatattgtgatgttcccac 304  Q
    ||||| ||||| ||||| |||||| |||| |||   ||||| || ||||| ||||| |||| |||||  ||| | || ||||||||| |||||| |||      
T  29777142 gtaacttgaggcgaatgtatatcattttgttcaacatatcccgatattctggcaaacgtttgttgctcttttgggtaaccagatattttgatgtcccctt 29777043  T
Q  305 caatatatccaccagtttttctaccagaaagcacatccatcagagt 350  Q
    | ||||| || ||||||||||| |||| ||| |||||||| |||||    
T  29777042 ctatataccctccagtttttctgccagcaagtacatccattagagt 29776997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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