View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4041_low_9 (Length: 344)

Name: NF4041_low_9
Description: NF4041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4041_low_9
NF4041_low_9
[»] chr1 (2 HSPs)
chr1 (46-284)||(33614688-33614926)
chr1 (1-47)||(33614579-33614625)
[»] chr5 (2 HSPs)
chr5 (163-284)||(33436769-33436890)
chr5 (1-47)||(33437062-33437108)
[»] chr3 (2 HSPs)
chr3 (210-284)||(13791665-13791739)
chr3 (220-284)||(18353823-18353887)
[»] chr8 (1 HSPs)
chr8 (205-266)||(24236845-24236906)
[»] chr4 (1 HSPs)
chr4 (201-283)||(16158693-16158775)
[»] chr6 (1 HSPs)
chr6 (210-254)||(17884934-17884978)


Alignment Details
Target: chr1 (Bit Score: 163; Significance: 5e-87; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 46 - 284
Target Start/End: Original strand, 33614688 - 33614926
Alignment:
Q  46 cactcacacttaccactaccattgaaaaatgagaaaataaaaagttatagatagaagttataagttagaagaacaaaaacattagagttggttaatttat 145  Q
    |||||||||||||||||| |||| |||||||||| ||||||||||||||| |||||| ||||||||||||||||||| |||| | || |||||| ||| |    
T  33614688 cactcacacttaccactaacattcaaaaatgagataataaaaagttatagttagaaggtataagttagaagaacaaatacatgaaagctggttatttttt 33614787  T
Q  146 ctcaaagagatcataataaaaatggaaacatggatcaccttgcatcagtaatctcaaaaacaaccatcttggtgaccttaccatcccttacatactctct 245  Q
     ||||||| |  | || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33614788 gtcaaagaaaatagaacaaaaatggaaacatggatgaccttgcatcagtaatctcaaaaacaaccatcttggtgaccttaccatcccttacatactctct 33614887  T
Q  246 ctcagcagagataccagtcataaacccaagaacatctac 284  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  33614888 ctcagcagagatatcagtcataaacccaagaacatctac 33614926  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 33614579 - 33614625
Alignment:
Q  1 acctctgaatatcttaacctttgcaaactgcaccaagattataggca 47  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||    
T  33614579 acctctgaatatcttcaccttggcaaactgcaccaagattataggca 33614625  T

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Target: chr5 (Bit Score: 106; Significance: 5e-53; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 163 - 284
Target Start/End: Complemental strand, 33436890 - 33436769
Alignment:
Q  163 aaaaatggaaacatggatcaccttgcatcagtaatctcaaaaacaaccatcttggtgaccttaccatcccttacatactctctctcagcagagataccag 262  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  33436890 aaaaatggaaacatggatcaccttgcatcagtaatctcaaaaataaccatcttggtgaccttaccatcccttacatactctctctcaacagagattccag 33436791  T
Q  263 tcataaacccaagaacatctac 284  Q
    ||||||| ||||||||||||||    
T  33436790 tcataaaaccaagaacatctac 33436769  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 33437108 - 33437062
Alignment:
Q  1 acctctgaatatcttaacctttgcaaactgcaccaagattataggca 47  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||    
T  33437108 acctctgaatatcttgaccttggcaaactgcaccaagattataggca 33437062  T

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Target: chr3 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 210 - 284
Target Start/End: Original strand, 13791665 - 13791739
Alignment:
Q  210 catcttggtgaccttaccatcccttacatactctctctcagcagagataccagtcataaacccaagaacatctac 284  Q
    |||||||||||||||||||||||| ||||  || ||||||||||||||||||||||| || |||| |||||||||    
T  13791665 catcttggtgaccttaccatccctcacatgttccctctcagcagagataccagtcatcaatccaacaacatctac 13791739  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 220 - 284
Target Start/End: Original strand, 18353823 - 18353887
Alignment:
Q  220 accttaccatcccttacatactctctctcagcagagataccagtcataaacccaagaacatctac 284  Q
    |||||||||||||| |||||||| ||||||||||| ||||| ||||| || ||||||||||||||    
T  18353823 accttaccatccctcacatactccctctcagcagatataccggtcatcaatccaagaacatctac 18353887  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 205 - 266
Target Start/End: Original strand, 24236845 - 24236906
Alignment:
Q  205 acaaccatcttggtgaccttaccatcccttacatactctctctcagcagagataccagtcat 266  Q
    |||| |||||| ||||||||||||||||| |||||||| |||||||||||||||| ||||||    
T  24236845 acaatcatcttcgtgaccttaccatccctcacatactccctctcagcagagatacaagtcat 24236906  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 283
Target Start/End: Complemental strand, 16158775 - 16158693
Alignment:
Q  201 aaaaacaaccatcttggtgaccttaccatcccttacatactctctctcagcagagataccagtcataaacccaagaacatcta 283  Q
    |||||||||||||||||| ||||| ||||| || | |||||| ||||||   || ||||||||||| || |||| ||||||||    
T  16158775 aaaaacaaccatcttggtcaccttgccatctctaatatactccctctcatttgatataccagtcattaagccaacaacatcta 16158693  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 254
Target Start/End: Original strand, 17884934 - 17884978
Alignment:
Q  210 catcttggtgaccttaccatcccttacatactctctctcagcaga 254  Q
    ||||||||| ||||||||||||||  ||||||||| |||||||||    
T  17884934 catcttggttaccttaccatccctatcatactctcgctcagcaga 17884978  T

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