View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4042_high_3 (Length: 316)

Name: NF4042_high_3
Description: NF4042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4042_high_3
NF4042_high_3
[»] chr5 (20 HSPs)
chr5 (1-296)||(22767368-22767663)
chr5 (1-273)||(15988883-15989155)
chr5 (1-273)||(20204736-20205008)
chr5 (14-224)||(41940920-41941130)
chr5 (1-273)||(8387867-8388139)
chr5 (1-221)||(30222985-30223205)
chr5 (115-273)||(12660211-12660369)
chr5 (1-227)||(27533086-27533313)
chr5 (1-272)||(4267892-4268151)
chr5 (80-273)||(26597591-26597784)
chr5 (90-272)||(27292304-27292486)
chr5 (100-273)||(25730688-25730861)
chr5 (124-273)||(11375647-11375796)
chr5 (81-163)||(16074597-16074679)
chr5 (1-135)||(34653864-34653997)
chr5 (123-273)||(37448028-37448178)
chr5 (5-83)||(12660129-12660207)
chr5 (67-105)||(37447990-37448028)
chr5 (153-218)||(34652442-34652507)
chr5 (2-35)||(25730623-25730656)
[»] chr7 (13 HSPs)
chr7 (1-296)||(9328713-9329007)
chr7 (4-273)||(16731717-16731986)
chr7 (4-273)||(17709851-17710120)
chr7 (1-273)||(22289022-22289294)
chr7 (1-225)||(1581396-1581620)
chr7 (57-274)||(17877245-17877462)
chr7 (115-272)||(16098385-16098542)
chr7 (1-262)||(29201100-29201355)
chr7 (64-225)||(30493791-30493952)
chr7 (1-79)||(16098264-16098342)
chr7 (147-248)||(34578437-34578538)
chr7 (118-213)||(30824668-30824763)
chr7 (1-95)||(11745953-11746047)
[»] chr4 (16 HSPs)
chr4 (1-296)||(32577159-32577452)
chr4 (1-296)||(49119511-49119793)
chr4 (1-296)||(28425976-28426259)
chr4 (4-273)||(49951097-49951366)
chr4 (1-289)||(37245970-37246262)
chr4 (1-273)||(21321308-21321580)
chr4 (1-273)||(29655800-29656071)
chr4 (2-273)||(18442279-18442549)
chr4 (1-273)||(28537921-28538191)
chr4 (1-273)||(2064634-2064906)
chr4 (1-273)||(55734790-55735062)
chr4 (9-296)||(51735082-51735370)
chr4 (1-273)||(51259663-51259936)
chr4 (1-273)||(56065410-56065682)
chr4 (64-258)||(43840456-43840650)
chr4 (92-273)||(41835445-41835626)
[»] chr2 (8 HSPs)
chr2 (1-273)||(88340-88612)
chr2 (2-272)||(12130773-12131043)
chr2 (1-297)||(34696014-34696308)
chr2 (1-297)||(34718426-34718720)
chr2 (2-273)||(18345621-18345879)
chr2 (67-258)||(44017467-44017658)
chr2 (1-269)||(26198472-26198742)
chr2 (201-273)||(9709910-9709982)
[»] chr8 (7 HSPs)
chr8 (1-296)||(7127004-7127299)
chr8 (1-273)||(478190-478462)
chr8 (4-296)||(8451234-8451526)
chr8 (1-273)||(40588864-40589121)
chr8 (2-272)||(23853726-23853984)
chr8 (110-273)||(13414913-13415076)
chr8 (154-296)||(185702-185842)
[»] chr1 (13 HSPs)
chr1 (1-296)||(36733474-36733772)
chr1 (1-273)||(25682432-25682704)
chr1 (1-273)||(51113096-51113368)
chr1 (16-273)||(48949858-48950115)
chr1 (1-273)||(4394940-4395211)
chr1 (1-218)||(5609120-5609337)
chr1 (1-254)||(24538290-24538544)
chr1 (90-272)||(44527123-44527305)
chr1 (90-273)||(52109324-52109507)
chr1 (132-273)||(48166149-48166290)
chr1 (98-273)||(16816934-16817108)
chr1 (70-118)||(17507308-17507356)
chr1 (1-33)||(44527046-44527078)
[»] chr6 (9 HSPs)
chr6 (1-273)||(14679940-14680215)
chr6 (1-272)||(28106920-28107191)
chr6 (81-295)||(15606106-15606320)
chr6 (67-171)||(11731885-11731989)
chr6 (1-168)||(30802209-30802376)
chr6 (136-273)||(15053309-15053446)
chr6 (1-136)||(19364217-19364351)
chr6 (1-78)||(29368365-29368442)
chr6 (199-272)||(30802126-30802199)
[»] chr3 (11 HSPs)
chr3 (1-273)||(42340411-42340682)
chr3 (90-272)||(53496902-53497084)
chr3 (67-272)||(46007148-46007354)
chr3 (67-273)||(55199358-55199564)
chr3 (57-167)||(1070850-1070960)
chr3 (68-273)||(2615341-2615546)
chr3 (115-222)||(48227308-48227415)
chr3 (9-105)||(36310798-36310894)
chr3 (133-273)||(647345-647485)
chr3 (140-272)||(27941129-27941261)
chr3 (1-33)||(53496825-53496857)
[»] scaffold0446 (1 HSPs)
scaffold0446 (57-273)||(23-239)


Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 22767663 - 22767368
Alignment:
Q  1 gatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggaga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  22767663 gatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgccacacggccaaaatagagtgcaaggtaacaactcagtttgggaga 22767564  T
Q  101 aaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggaca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||| ||| ||    
T  22767563 aaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgacagtaatcatcttacatcttttgcgtgttgtgttagagattcccgggggca 22767464  T
Q  201 atttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactcacttctattcactttgatgatgt 296  Q
    ||||||||||||||||||||||||| |||| ||||||| ||||||||| |||||||||| ||||||||||||| || |||||||||||| ||||||    
T  22767463 atttattcgggctcaaacgaaatggcaacgggcaaatatgactgttttggagggggaggcagtagccttactcgctgctattcactttgctgatgt 22767368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 15989155 - 15988883
Alignment:
Q  1 gatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggaga 100  Q
    ||||||||||| ||||||||||||||||||||||| || ||||||  |||||||  |||||  |||||||||||||||||||||||||||||||||||||    
T  15989155 gatgcatggcaacaatggcaagaggttcataaacaaccttcactagcggttgtgcaacacgagcataatagagtgcaaggtaacaactcagtttgggaga 15989056  T
Q  101 aaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggaca 200  Q
    ||||||||||||| | ||||||||| ||| |||||| ||||||||||||||| |||||| ||||| ||||||| |||| ||| ||||| |  |  |  ||    
T  15989055 aaccgagcgagacgttgttgaagtgaaatatggatgtcgcgttccatgaccgcaaccatattacaacttttgcgtgttatgtcagagactttcgcgagca 15988956  T
Q  201 atttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactc 273  Q
    ||||||||||||||||||||||||| | ||  |||||| ||| ||||| |||||||||| |||| ||||||||    
T  15988955 atttattcgggctcaaacgaaatggcagcggacaaatatgacagttttggagggggaggcagtaaccttactc 15988883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 20204736 - 20205008
Alignment:
Q  1 gatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggaga 100  Q
    ||||||||||| ||||||||||||||||||||||| || ||||   ||||||||  ||||   || ||||||||| ||||||| ||||||||||||||||    
T  20204736 gatgcatggcaacaatggcaagaggttcataaacaaccctcacccttggttgtgcaacacaagcaaaatagagtgtaaggtaataactcagtttgggaga 20204835  T
Q  101 aaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggaca 200  Q
    |||| |  ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||| ||||| |||||| ||||  ||  |    
T  20204836 aaccaaatgagacatggttgaagtgcaatgtggatgccgcgttccatgaccataaccatattacatcttttacattttgtgctagagactcccgcgggaa 20204935  T
Q  201 atttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactc 273  Q
    |||||| | |||||||||||||||| |||| ||||||| ||| || || |||||||||| |||||||||||||    
T  20204936 atttatccaggctcaaacgaaatggcaacgggcaaatatgacagtattggagggggaggcagtagccttactc 20205008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 14 - 224
Target Start/End: Complemental strand, 41941130 - 41940920
Alignment:
Q  14 aatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggagaaaccgagcgagac 113  Q
    |||||||||||||||||||||| || || | || |||||||  |||||| || |||||||||||||||| |||| || |||||||||||||||||||||     
T  41941130 aatggcaagaggttcataaacaaccctcgccaccggttgtgcaacacgggcagaatagagtgcaaggtatcaacccaatttgggagaaaccgagcgagat 41941031  T
Q  114 atggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggacaatttattcgggct 213  Q
     |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  ||| |||||| ||| ||||  ||  |||||||||| |||    
T  41941030 gtggttgaagtgcaatgtggatgccgcgttccatgaccgtaactatcttacatcttttgtgtgtagtgttaaagactcccgtgggaaatttattcgagct 41940931  T
Q  214 caaacgaaatg 224  Q
    |||||||||||    
T  41940930 caaacgaaatg 41940920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 8387867 - 8388139
Alignment:
Q  1 gatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggaga 100  Q
    ||||||||||||||||| || |||||||||||||| || |||  |  | |||||  |||||| || ||||||||||||| |||||||||||| |||||||    
T  8387867 gatgcatggcagcaatgacaggaggttcataaacaaccctcatcatcgattgtgcaacacgggcagaatagagtgcaagctaacaactcagtctgggaga 8387966  T
Q  101 aaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggaca 200  Q
    ||||| | ||||| |||||||||| |||||||||||||||||| ||||||||| |  || |||||||||| || |||||||||||||| || |  || ||    
T  8387967 aaccgcgtgagacgtggttgaagtacaatgtggatgccgcgtttcatgaccgttaaaatattacatctttcgcgtgttgtgttagagactctcgtgggca 8388066  T
Q  201 atttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactc 273  Q
    ||| |||| |||||||||||||||| ||||  |||||| ||| ||||| |||||||||| ||| |||||||||    
T  8388067 attcattcaggctcaaacgaaatggcaacgaacaaatatgacagttttggagggggaggcagttgccttactc 8388139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 30223205 - 30222985
Alignment:
Q  1 gatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggaga 100  Q
    |||||||| || ||||| ||||||||||||||||| || |||| |   ||||||  |||||| || ||||||||||||||||||||||| ||||||||||    
T  30223205 gatgcatgacaacaatgacaagaggttcataaacagccctcaccaacagttgtgcaacacgggcagaatagagtgcaaggtaacaactctgtttgggaga 30223106  T
Q  101 aaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggaca 200  Q
    ||||| ||||||| ||||  ||||||||  |||| | ||||||||||||| |||||||| ||||||||||||| |||||||||||||| | ||| || ||    
T  30223105 aaccgtgcgagacgtggtcaaagtgcaacatggacgtcgcgttccatgactgtaaccatattacatcttttgcgtgttgtgttagagacttccatgggca 30223006  T
Q  201 atttattcgggctcaaacgaa 221  Q
    |||||||||||||||||||||    
T  30223005 atttattcgggctcaaacgaa 30222985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 115 - 273
Target Start/End: Original strand, 12660211 - 12660369
Alignment:
Q  115 tggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggacaatttattcgggctc 214  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |  || |||||||||||||||||||    
T  12660211 tggttgaagtgcaatgtggatgccgcgttccatgaacgtaaccatcttacatcttttgcgtgttgtgttagagactttcatggacaatttattcgggctc 12660310  T
Q  215 aaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactc 273  Q
    ||||||||||| | || ||||||| ||| || |||||| |||||| ||||| |||||||    
T  12660311 aaacgaaatggcagcgggcaaatatgacagtgttagagcgggaggcagtagtcttactc 12660369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 27533313 - 27533086
Alignment:
Q  1 gatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggaga 100  Q
    ||||||||||| ||||| |||||||||||||||||||| |||| || |||||||  |||| | || |||| |||||||||||| |  | |||||||||||    
T  27533313 gatgcatggcaacaatgacaagaggttcataaacatccctcaccaccggttgtgcaacacagacagaatatagtgcaaggtaatagtttagtttgggaga 27533214  T
Q  101 aaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatc-ttttgcatgttgtgttagagattcccagggac 199  Q
    || || |||||||  |  ||||||| |||||||||| |||||||||||| ||||||||  ||||||| |||||| |||||||||||||| ||||  || |    
T  27533213 aatcgcgcgagacgcgactgaagtgtaatgtggatgtcgcgttccatgatcgtaaccagtttacatctttttgcgtgttgtgttagagactcccgtgggc 27533114  T
Q  200 aatttattcgggctcaaacgaaatggta 227  Q
    ||||||||||||||||||||||||||||    
T  27533113 aatttattcgggctcaaacgaaatggta 27533086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 4267892 - 4268151
Alignment:
Q  1 gatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggaga 100  Q
    ||||||||||||||||||||||||||||||||| |||  |||| |  |||||||  |||||| || |||||||||||||            |||||||||    
T  4267892 gatgcatggcagcaatggcaagaggttcataaaaatcgttcaccatcggttgtgcaacacgggcagaatagagtgcaag------------tttgggaga 4267979  T
Q  101 aaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggaca 200  Q
    |||||| |||| ||||||| |||||||| ||||| |||||||| | |||  |||||||| ||||||||||||| |||||||||||||| || |  || ||    
T  4267980 aaccgaacgagtcatggttaaagtgcaacgtggacgccgcgtttcttgattgtaaccatattacatcttttgcgtgttgtgttagagactctcgtgggca 4268079  T
Q  201 atttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttact 272  Q
    |||||||| ||||||||| |||||| | || ||||||| ||| ||||| |||||||||| ||||||||||||    
T  4268080 atttattcaggctcaaacaaaatggcagcgggcaaatatgacagttttggagggggaggcagtagccttact 4268151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 80 - 273
Target Start/End: Complemental strand, 26597784 - 26597591
Alignment:
Q  80 gtaacaactcagtttgggagaaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttg 179  Q
    |||||||| |||||||||||||| || |  |||| ||||||||||||||||||||||||||||| ||||| | | | ||| |||||||||| || |||||    
T  26597784 gtaacaacacagtttgggagaaatcgtgtaagacgtggttgaagtgcaatgtggatgccgcgtttcatgatcatcaacatattacatctttcgcgtgttg 26597685  T
Q  180 tgttagagattcccagggacaatttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactc 273  Q
    ||||||||| ||||  |||||||| ||||||||||||||||||||| |||| ||||||| |||  |||| |||||||||| ||| |||||||||    
T  26597684 tgttagagactcccgtggacaattcattcgggctcaaacgaaatggcaacgagcaaatatgacaattttggagggggaggcagttgccttactc 26597591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 90 - 272
Target Start/End: Original strand, 27292304 - 27292486
Alignment:
Q  90 agtttgggagaaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagat 189  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||| | ||||||||||  |||||||| |||||| |||||||||||||||||||||     
T  27292304 agtttgggagaaaccgaacgagtcatggttgaagtgcaatgtggatgtcacgttccatgatagtaaccatattacatattttgcatgttgtgttagagac 27292403  T
Q  190 tcccagggacaatttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttact 272  Q
    || |  || |||||||||||||||||||| |||||| | ||  ||||||  | ||||||  ||||||||| | ||||||||||    
T  27292404 tctcgtgggcaatttattcgggctcaaacaaaatggcagcggacaaatattattgttttgaagggggaggcaatagccttact 27292486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 100 - 273
Target Start/End: Original strand, 25730688 - 25730861
Alignment:
Q  100 aaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggac 199  Q
    |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||  |||  | |||||||||||||  || |  ||      
T  25730688 aaaccgagcgagacgtggttgaagtgcaatgtggattccgcgttccatgaccgtaaccatattacaattttcacgtgttgtgttagagtctcacgcggga 25730787  T
Q  200 aatttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactc 273  Q
    |||||||||| ||||||||||||||| | || ||||||| ||| ||||| |||||||||| |||||||||||||    
T  25730788 aatttattcgagctcaaacgaaatggcagcgggcaaatatgacagttttggagggggaggcagtagccttactc 25730861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 124 - 273
Target Start/End: Complemental strand, 11375796 - 11375647
Alignment:
Q  124 tgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggacaatttattcgggctcaaacgaaat 223  Q
    |||||||||||||| ||||||||||| ||||||||| ||||| |||||||||||||||||||||| || |   |   |||||||||| ||||||||||||    
T  11375796 tgcaatgtggatgctgcgttccatgaacgtaaccatattacaacttttgcatgttgtgttagagactctcgcaggtgatttattcggactcaaacgaaat 11375697  T
Q  224 ggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactc 273  Q
    || | || | ||||| ||| ||||| |||||||||  |||||||||||||    
T  11375696 ggcagcgagtaaatatgacagttttggagggggagacagtagccttactc 11375647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 81 - 163
Target Start/End: Original strand, 16074597 - 16074679
Alignment:
Q  81 taacaactcagtttgggagaaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatctta 163  Q
    |||||||| ||||| |||||||||| ||||||| ||||  ||||||||||||||||||||||||||||| |||||||||||||    
T  16074597 taacaacttagtttaggagaaaccgtgcgagacgtggtcaaagtgcaatgtggatgccgcgttccatgaacgtaaccatctta 16074679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 34653997 - 34653864
Alignment:
Q  1 gatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggaga 100  Q
    ||||||||||| ||||||||| || |||||||||| || |||  ||  ||||||  |||||  || ||||||||||| || ||||||| |||||||||||    
T  34653997 gatgcatggcaacaatggcaaaagattcataaacaaccctcaacaccagttgtgcaacacgtgcagaatagagtgca-ggcaacaactaagtttgggaga 34653899  T
Q  101 aaccgagcgagacatggttgaagtgcaatgtggat 135  Q
    |||||  |||||| |||||||||||||||||||||    
T  34653898 aaccgcacgagacgtggttgaagtgcaatgtggat 34653864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 123 - 273
Target Start/End: Original strand, 37448028 - 37448178
Alignment:
Q  123 gtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggacaatttattcgggctcaaacgaaa 222  Q
    |||| ||||||||| || ||||||||||| ||||||||||||||| |||  ||||||||||||||| || |  ||||||| ||||||| ||||||| |||    
T  37448028 gtgcgatgtggatgtcgtgttccatgaccataaccatcttacatcgtttatatgttgtgttagagactctcgtggacaatgtattcggactcaaacaaaa 37448127  T
Q  223 tggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactc 273  Q
    ||| | |||||||| | ||| || ||  | |||||||  ||||||||||||    
T  37448128 tggcagcgtgcaaacatgacagtgttgaaaggggaggcggtagccttactc 37448178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 83
Target Start/End: Original strand, 12660129 - 12660207
Alignment:
Q  5 catggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaa 83  Q
    |||||||| ||||||||||| ||||||||||  ||| || || |||||||  ||| || ||||||||||||||||||||    
T  12660129 catggcagtaatggcaagagattcataaacaggcattaccaccggttgtgcaacatggacataatagagtgcaaggtaa 12660207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 105
Target Start/End: Original strand, 37447990 - 37448028
Alignment:
Q  67 aatagagtgcaaggtaacaactcagtttgggagaaaccg 105  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  37447990 aatagagtgcaaggtaacagctcagtttgggagaaaccg 37448028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 153 - 218
Target Start/End: Complemental strand, 34652507 - 34652442
Alignment:
Q  153 taaccatcttacatcttttgcatgttgtgttagagattcccagggacaatttattcgggctcaaac 218  Q
    ||||||||||||||||||||  |||||||||||||| ||||  || |||||||| ||| |||||||    
T  34652507 taaccatcttacatcttttgtgtgttgtgttagagactcccgtgggcaatttatccggtctcaaac 34652442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 35
Target Start/End: Original strand, 25730623 - 25730656
Alignment:
Q  2 atgcatggcagcaatggcaagaggttcataaaca 35  Q
    |||||||||||||||| |||||||||||||||||    
T  25730623 atgcatggcagcaatgccaagaggttcataaaca 25730656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 9329007 - 9328713
Alignment:
Q  1 gatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggaga 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||    
T  9329007 gatgcatggcagcaatggcaagatgttcataaacatccatcactactggttgtgccacacggctagaatagagtgcaaggtaacaactcagtttgggaga 9328908  T
Q  101 aaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggaca 200  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||    
T  9328907 aaccgagcgagacatggttgaagtgtaatgtggatgccgcgttccatgaccgtaaccatcttacatcatttgcgtgttgtgttagagattccc-gggaca 9328809  T
Q  201 atttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactcacttctattcactttgatgatgt 296  Q
    ||||||||| ||||||||||||||| |||| | ||||| ||||||||| |||||||||| ||||||||||||| || |||||||||||| ||||||    
T  9328808 atttattcgagctcaaacgaaatggcaacgggaaaatatgactgttttggagggggaggcagtagccttactcgctgctattcactttgctgatgt 9328713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 4 - 273
Target Start/End: Original strand, 16731717 - 16731986
Alignment:
Q  4 gcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggagaaac 103  Q
    |||||||| ||||||||||||||||||||||| |  |||| ||  ||||||  ||||   ||||||||||||||||||||||||||||||||||||||||    
T  16731717 gcatggcaacaatggcaagaggttcataaacaacactcaccaccagttgtgcaacacatgcataatagagtgcaaggtaacaactcagtttgggagaaac 16731816  T
Q  104 cgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggacaatt 203  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||  || |||||    
T  16731817 cgagcgagacatggttgaagtgcaatgtggatgccgtgttccatgaccgcaaccatattacatcttttgcatgttgtgttagagattcccgcgggcaatt 16731916  T
Q  204 tattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactc 273  Q
    |||||||||||||||||||||| |  | ||||||| ||| || || |||||||||| |||||||||||||    
T  16731917 tattcgggctcaaacgaaatggcagagggcaaatatgacagtattggagggggaggcagtagccttactc 16731986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 4 - 273
Target Start/End: Original strand, 17709851 - 17710120
Alignment:
Q  4 gcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggagaaac 103  Q
    |||||||| ||||||||||||||||||||||| |  |||| ||  ||||||  ||||   ||||||||||||||||||||||||||||||||||||||||    
T  17709851 gcatggcaacaatggcaagaggttcataaacaacactcaccaccagttgtgcaacacatgcataatagagtgcaaggtaacaactcagtttgggagaaac 17709950  T
Q  104 cgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggacaatt 203  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||  || |||||    
T  17709951 cgagcgagacatggttgaagtgcaatgtggatgccgtgttccatgaccgcaaccatattacatcttttgcatgttgtgttagagattcccgcgggcaatt 17710050  T
Q  204 tattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactc 273  Q
    |||||||||||||||||||||| |  | ||||||| ||| || || |||||||||| |||||||||||||    
T  17710051 tattcgggctcaaacgaaatggcagagggcaaatatgacagtattggagggggaggcagtagccttactc 17710120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 22289022 - 22289294
Alignment:
Q  1 gatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggaga 100  Q
    ||||||||||||||||| || |||||||||||||| || |||  |  |||||||  |||||| || ||||||||||||| ||||||||||||||||||||    
T  22289022 gatgcatggcagcaatgacaggaggttcataaacaaccctcatcatcggttgtgcaacacgggcagaatagagtgcaagctaacaactcagtttgggaga 22289121  T
Q  101 aaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggaca 200  Q
    | ||| | ||||| ||||| ||||||||||||||||||||||| ||||||||| | ||| |||||||||| || |||||||||||||||||||  || ||    
T  22289122 agccgcgtgagacgtggtttaagtgcaatgtggatgccgcgtttcatgaccgtcaacatattacatctttcgcgtgttgtgttagagattcccgtgggca 22289221  T
Q  201 atttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactc 273  Q
    ||| |||||| |||| ||||||||| |||| ||||||| ||| ||||| ||||||||||| || |||||||||    
T  22289222 attcattcggactcagacgaaatggcaacgagcaaatatgacagttttggagggggaggtggttgccttactc 22289294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 1581396 - 1581620
Alignment:
Q  1 gatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggaga 100  Q
    ||||| ||||| |||||||||||||||||||||||||| |||| |  ||||||   |||||  || | || ||||||| |||||||||||||||||||||    
T  1581396 gatgcttggcaacaatggcaagaggttcataaacatccctcaccatcggttgtacaacacgaacaaagtatagtgcaacgtaacaactcagtttgggaga 1581495  T
Q  101 aaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggaca 200  Q
    ||| ||||||||  ||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||| ||||||| |||||| |||   ||| |    
T  1581496 aactgagcgagatgtggttgaagtgcaatgtggatgctgcgttccatgaccataaccatattacatcttttgcgtgttgtgctagagactccagcggata 1581595  T
Q  201 atttattcgggctcaaacgaaatgg 225  Q
     ||||| ||||||||||||||||||    
T  1581596 gtttatccgggctcaaacgaaatgg 1581620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 57 - 274
Target Start/End: Original strand, 17877245 - 17877462
Alignment:
Q  57 acacggccataatagagtgcaaggtaacaactcagtttgggagaaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaac 156  Q
    |||||| |||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||  |||||    
T  17877245 acacgggcataatcgagtgcaaggtaacaactcaatttgggagaaaccgagcgagacgtggttgaaatgcaatgtggatgtcgcgttccatgattgtaac 17877344  T
Q  157 catcttacatcttttgcatgttgtgttagagattcccagggacaatttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagaggggg 256  Q
    ||| |||||| | |||| ||| | |||| ||| ||||| ||  | || ||||| ||||||||||||| | | || | ||||| ||| || || |||||||    
T  17877345 catattacatttgttgcgtgtggcgttatagactcccatgggaagttcattcgtgctcaaacgaaatcgcagcggggaaatatgacagtattggaggggg 17877444  T
Q  257 aggtagtagccttactca 274  Q
    ||| ||||||||||||||    
T  17877445 aggaagtagccttactca 17877462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 115 - 272
Target Start/End: Original strand, 16098385 - 16098542
Alignment:
Q  115 tggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggacaatttattcgggctc 214  Q
    |||||||||||||||||||| ||  |||||||||||||||||||| |||| |||||||| |||||||||||||| |||||  | ||||||||||||||||    
T  16098385 tggttgaagtgcaatgtggacgcatcgttccatgaccgtaaccatattacttcttttgcgtgttgtgttagagactcccataggcaatttattcgggctc 16098484  T
Q  215 aaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttact 272  Q
    ||||||||||| ||||  |||||| |||  |||| ||||| |||||||||||||||||    
T  16098485 aaacgaaatggaaacgaacaaatatgacaattttggagggagaggtagtagccttact 16098542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 29201355 - 29201100
Alignment:
Q  1 gatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggaga 100  Q
    |||||||| |||||||| ||||||||||||||||| || |||| |  |||||||  |||||| || |||| |||||||||||| | ||||||||||||||    
T  29201355 gatgcatgacagcaatgacaagaggttcataaacagccctcaccatcggttgtgcaacacggacaaaatacagtgcaaggtaatagctcagtttgggaga 29201256  T
Q  101 aaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattc--ccaggga 198  Q
    |||||  |||||| ||||||||||||||||| |||||||| ||||||        |||| ||| |||||||||||||||| ||||||| ||      ||     
T  29201255 aaccgcacgagacgtggttgaagtgcaatgttgatgccgctttccat--------ccatattatatcttttgcatgttgtattagagactcatgtgtggc 29201164  T
Q  199 caatttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtag 262  Q
    || |||||||||||||||||||||||  | ||  |||||| ||| ||||| |||||||||||||    
T  29201163 cagtttattcgggctcaaacgaaatgacagcggacaaatatgacagttttggagggggaggtag 29201100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 64 - 225
Target Start/End: Complemental strand, 30493952 - 30493791
Alignment:
Q  64 cataatagagtgcaaggtaacaactcagtttgggagaaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatctta 163  Q
    ||||||| |||||||| ||||||| |||||||| ||||| ||| ||| || ||||| ||||||||| |||||| ||| ||||||||| ||||||| ||||    
T  30493952 cataataaagtgcaagataacaacacagtttggaagaaatcgaacgaaacgtggttaaagtgcaatatggatgtcgcattccatgactgtaaccaactta 30493853  T
Q  164 catcttttgcatgttgtgttagagattcccagggacaatttattcgggctcaaacgaaatgg 225  Q
    ||| |||||| |||||||||||| |||| || || ||||||| || ||||||||||||||||    
T  30493852 catattttgcgtgttgtgttagaaattctcatgggcaatttactcaggctcaaacgaaatgg 30493791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 16098264 - 16098342
Alignment:
Q  1 gatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaag 79  Q
    ||||||||||| |||||||||||||||| ||||||||  |||| || |||||||  |||||| ||||||||||||||||    
T  16098264 gatgcatggcatcaatggcaagaggttcctaaacatcattcaccaccggttgtgcaacacgggcataatagagtgcaag 16098342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 147 - 248
Target Start/End: Complemental strand, 34578538 - 34578437
Alignment:
Q  147 tgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggacaatttattcgggctcaaacgaaatggtaacgtgcaaatacgactgtt 246  Q
    ||||||| | ||| ||||||||||||| ||||||||| || ||||||  || ||||||||||||||||| ||||||||  |||| ||||||| ||| |||    
T  34578538 tgaccgttaacatattacatcttttgcgtgttgtgttcgaaattcccgtgggcaatttattcgggctcagacgaaatgacaacgagcaaatatgacagtt 34578439  T
Q  247 tt 248  Q
    ||    
T  34578438 tt 34578437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 118 - 213
Target Start/End: Complemental strand, 30824763 - 30824668
Alignment:
Q  118 ttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggacaatttattcgggct 213  Q
    ||||||||||||||||||||  | || |||||| |||  ||| |||||||||||||||||||||||||||| | ||  | | ||||||||||||||    
T  30824763 ttgaagtgcaatgtggatgctacatttcatgactgtagtcatattacatcttttgcatgttgtgttagagactgccgcgaataatttattcgggct 30824668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 11746047 - 11745953
Alignment:
Q  1 gatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttg 95  Q
    |||||||| ||  |||||||| |||| |||||||| || |||| || |||||||  |||| | || |||||||||||| ||||||||||||||||    
T  11746047 gatgcatgacaataatggcaacaggtgcataaacaaccctcaccaccggttgtgcaacacagacagaatagagtgcaaagtaacaactcagtttg 11745953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 32577452 - 32577159
Alignment:
Q  1 gatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggaga 100  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||| | |||||  ||||||||| |||| |||||||||||||||||||||||||||||    
T  32577452 gatgcatggcggcaatggcaagaggttcataaacatccgtcactaccgtttgtgcaacacggccagaatatagtgcaaggtaacaactcagtttgggaga 32577353  T
Q  101 aaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggaca 200  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||| ||    
T  32577352 aaccgag-gagacatggttgaagtgcaatgtggatgctgcgttccatgaccttaaccatcttacatcttttgcgtgttgtgttagagattccc-ggggca 32577255  T
Q  201 atttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactcacttctattcactttgatgatgt 296  Q
    ||||||||||||||||||||||||| |||| ||||||| ||||||||| |||||||||||| ||||||||||| || ||||| |||||| ||||||    
T  32577254 atttattcgggctcaaacgaaatggcaacgggcaaatatgactgttttggagggggaggtactagccttactcgctgctatttactttgctgatgt 32577159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 49119793 - 49119511
Alignment:
Q  1 gatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||| ||||||||||| |||||||||| |    
T  49119793 gatgcatggcagcaatggcaagaggttcataaacatccatcactattggttgtgccacacggccagaatagagtgtaaggtaacaacccagtttgggata 49119694  T
Q  101 aaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggaca 200  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||            
T  49119693 aaccaagcgagacatggctgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgtgtgttgtgttagagattcc-------- 49119602  T
Q  201 atttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactcacttctattcactttgatgatgt 296  Q
         |||||||||||||||||||| |||  ||||||| ||||||||| |||||||||| ||||||||||||| || |||||||||||| ||||||    
T  49119601 -----ttcgggctcaaacgaaatggcaacaggcaaatatgactgttttggagggggaggcagtagccttactcgctgctattcactttgctgatgt 49119511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 28425976 - 28426259
Alignment:
Q  1 gatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactc-agtttgggag 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||| ||||||||||| | |||||||||     
T  28425976 gatgcatggcagcaatggcaagaggttcataaacatccatcactattggttgtgccacacggccagaatagagtgtaaggtaacaaccccagtttgggat 28426075  T
Q  100 aaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggac 199  Q
    ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||           
T  28426076 aaaccaagcgagacatggctgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgtgtgttgtgttagagattcc------- 28426168  T
Q  200 aatttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactcacttctattcactttgatgatgt 296  Q
          |||||||||||||||||||| |||  ||||||| ||||||||| |||||||||| ||||||||||||| || |||||||||||| ||||||    
T  28426169 ------ttcgggctcaaacgaaatggcaacaggcaaatatgactgttttggagggggaggcagtagccttactcgctgctattcactttgctgatgt 28426259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 4 - 273
Target Start/End: Original strand, 49951097 - 49951366
Alignment:
Q  4 gcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggagaaac 103  Q
    |||||||| ||||||||||||||||||||||| |  |||| ||  ||||||  |||| | ||||||||||||||||||||||||||||||| ||||||||    
T  49951097 gcatggcaacaatggcaagaggttcataaacaacgctcaccaccagttgtgcaacacaggcataatagagtgcaaggtaacaactcagttttggagaaac 49951196  T
Q  104 cgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggacaatt 203  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||| |||||||||||||| |  || |||||    
T  49951197 cgagcgagacatggttgaagtgcaatgtggatgccgcattccatgaccgcaaccatattacatcttttgcatgctgtgttagagattctcgcggccaatt 49951296  T
Q  204 tattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactc 273  Q
    |||||||||||||||||||||| | || ||||||| ||| || || |||||||||| |||||||||||||    
T  49951297 tattcgggctcaaacgaaatggcagcgggcaaatatgacagtattggagggggaggcagtagccttactc 49951366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 37246262 - 37245970
Alignment:
Q  1 gatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaag----gtaacaactcagtttgg 96  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||| |||||||  ||| | ||  ||||| |||||||    ||||||||| |||||||    
T  37246262 gatgcatggcagcaatggcatgaggttcataaacatccctcactaccggttgtgcaacatgaccggaatagggtgcaaggtacgtaacaacttagtttgg 37246163  T
Q  97 gagaaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattccc-ag 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| | |||||||||||||||||| |||| ||    
T  37246162 gagaaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaatcgtcttacatcctctgcatgttgtgttagagactcccgag 37246063  T
Q  196 ggacaatttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactcacttctattcactttg 289  Q
    ||| ||||||||||||| |||||||||||| |||| ||||||| ||| ||||| |||||||||| |||||||||||||  | ||||||||||||    
T  37246062 gga-aatttattcgggcacaaacgaaatggaaacgggcaaatatgacagttttggagggggaggcagtagccttactcgatgctattcactttg 37245970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 21321308 - 21321580
Alignment:
Q  1 gatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggaga 100  Q
    ||||| ||||||||||||||||| |||||||||||||| ||||||| ||||||   |||||  ||||||||||||||||| |||||| ||||||||||||    
T  21321308 gatgcttggcagcaatggcaagatgttcataaacatccctcactaccggttgtacaacacgagcataatagagtgcaaggcaacaacacagtttgggaga 21321407  T
Q  101 aaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggaca 200  Q
    || ||||||| || ||||||||||||||||||||||  ||||||||||||||||||||| ||||| |||||||||||||| ||||||| || |  ||  |    
T  21321408 aatcgagcgaaacgtggttgaagtgcaatgtggatgttgcgttccatgaccgtaaccatattacaacttttgcatgttgtattagagactctcgcgggaa 21321507  T
Q  201 atttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactc 273  Q
    ||||||||||||||||||||||||| |||| ||||||| ||| ||||| |||||||||  | |||||||||||    
T  21321508 atttattcgggctcaaacgaaatggcaacgggcaaatatgacagttttggagggggagacaatagccttactc 21321580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 29656071 - 29655800
Alignment:
Q  1 gatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggaga 100  Q
    |||||||||||||||||| ||||||||||||||||| |||||| || || ||||  ||| || ||||||||| |||||||||| | |||||||||| |||    
T  29656071 gatgcatggcagcaatggaaagaggttcataaacattcatcaccaccgggtgtgcaacatgggcataatagaatgcaaggtaatatctcagtttggaaga 29655972  T
Q  101 aaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggaca 200  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||  |||||||||||||  ||||  || ||    
T  29655971 aaccgagtgagacatggttgaagtgtaatgtggatgccgcgttccatgatcgtaaccctcttacatcttttg-ttgttgtgttagaggctcccgtgggca 29655873  T
Q  201 atttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactc 273  Q
    |||||||||||||||||| |||||| | || ||||||| ||||||||| ||||| |||| |||||||||||||    
T  29655872 atttattcgggctcaaacaaaatggcagcgggcaaatatgactgttttggagggagaggcagtagccttactc 29655800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 2 - 273
Target Start/End: Complemental strand, 18442549 - 18442279
Alignment:
Q  2 atgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggagaa 101  Q
    |||||||||| ||||||||||| ||||||||||| || |||  || |||||||  | || | || ||||||||||||||||||||||| |||||||||||    
T  18442549 atgcatggcaacaatggcaagatgttcataaacaacc-tcatcaccggttgtgcaatacagacaaaatagagtgcaaggtaacaactctgtttgggagaa 18442451  T
Q  102 accgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggacaa 201  Q
    |||||||||||| |||||||||||||||| ||||| ||||||||||||||| |||||| ||||| ||||||| |||||||||||||| ||||| || |||    
T  18442450 accgagcgagacgtggttgaagtgcaatgcggatgtcgcgttccatgaccgcaaccatattacaacttttgcgtgttgtgttagagactcccatgggcaa 18442351  T
Q  202 tttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactc 273  Q
    |||||||||||||||||||||||| | || | ||||| ||| || || |||||||||| |||||||||||||    
T  18442350 tttattcgggctcaaacgaaatggaagcgggaaaatatgacagtattggagggggaggcagtagccttactc 18442279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 28538191 - 28537921
Alignment:
Q  1 gatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggaga 100  Q
    |||||||| || ||||||||||||||||||||||| |  |||| || | ||||   |||||| || | |||||||||||||||||| |||||||||||||    
T  28538191 gatgcatgtcaacaatggcaagaggttcataaacaccactcaccaccgattgtacaacacgggcacagtagagtgcaaggtaacaattcagtttgggaga 28538092  T
Q  101 aaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggaca 200  Q
    |||||| |||||| ||||||||||||||||||||||| ||||||||||| ||||||||| |||||| |||||| |||||||||||||| ||||| || ||    
T  28538091 aaccgaacgagacgtggttgaagtgcaatgtggatgctgcgttccatgatcgtaaccatattacatattttgcgtgttgtgttagagactcccacgggca 28537992  T
Q  201 atttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactc 273  Q
    ||||||||||||||||||||||||| | || | ||||| ||  ||||  |||||||||| |||||||||||||    
T  28537991 atttattcgggctcaaacgaaatggcagcgggaaaatatgatagttt--gagggggaggcagtagccttactc 28537921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 2064634 - 2064906
Alignment:
Q  1 gatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggaga 100  Q
    |||||||| || |||||||||||||||| |||||| || |||| |  |||||||  |||||| || ||||||||||||||||||||||||||||||||||    
T  2064634 gatgcatgacaacaatggcaagaggttcgtaaacaaccttcaccatcggttgtgcaacacggacaaaatagagtgcaaggtaacaactcagtttgggaga 2064733  T
Q  101 aaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggaca 200  Q
    ||| ||||||| | |||||||||||||||||||| ||| |||||||||||||||||||| ||||||| | ||| |||||||||||||| ||||  ||| |    
T  2064734 aactgagcgagtcgtggttgaagtgcaatgtggacgccacgttccatgaccgtaaccatattacatcctctgcgtgttgtgttagagactcccgcggata 2064833  T
Q  201 atttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactc 273  Q
    |||||||||||||||||| |||||  | || ||||||| ||| || ||  ||||||||| |||||||||||||    
T  2064834 atttattcgggctcaaacaaaatgacagcgggcaaatatgacagtattgaagggggaggcagtagccttactc 2064906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 55734790 - 55735062
Alignment:
Q  1 gatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggaga 100  Q
    |||| |||||| ||||||||||| ||||||||||| ||||||  |  |||||||  | || | || ||||||||||||||||||||||| ||||||||||    
T  55734790 gatgtatggcaacaatggcaagatgttcataaacaaccatcatcatcggttgtgcaatacagacaaaatagagtgcaaggtaacaactcggtttgggaga 55734889  T
Q  101 aaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggaca 200  Q
    ||||||||||||  |||||||||||||||||||||| |||| ||||||| |  |||||| ||||||||||||| |||||||||||||| ||||| |  ||    
T  55734890 aaccgagcgagatgtggttgaagtgcaatgtggatgtcgcgctccatgatctcaaccatattacatcttttgcgtgttgtgttagagactcccatgagca 55734989  T
Q  201 atttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactc 273  Q
    |||| |||||||||||||||||||| | || ||||||| ||| || || |||||||||| |||||||||||||    
T  55734990 atttgttcgggctcaaacgaaatggaagcgagcaaatatgacagtattggagggggaggcagtagccttactc 55735062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 9 - 296
Target Start/End: Complemental strand, 51735370 - 51735082
Alignment:
Q  9 gcagcaatggcaagaggttcataaacatccatcactactgg-ttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggagaaaccgag 107  Q
    |||||||||||||||||||||||||||||| || |   | | |||||  |||  | || ||||| |||||| |||||| ||||||||||| |||||||||    
T  51735370 gcagcaatggcaagaggttcataaacatccctcccccatcgattgtgcaacataggcagaatagggtgcaatgtaacatctcagtttgggcgaaaccgag 51735271  T
Q  108 cgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggacaatttatt 207  Q
    |||||| |||||||||||||| ||||||||||||||||||||  |||||||||||||||||||||  |||||||||||||| | ||   |||||||||||    
T  51735270 cgagacgtggttgaagtgcaacgtggatgccgcgttccatgattgtaaccatcttacatcttttgtgtgttgtgttagagacttccgttgacaatttatt 51735171  T
Q  208 cgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactcacttctattcactttgatgatgt 296  Q
    |||||| ||||||||||  | |||||||||| ||| ||||| |||||||||| |||||||||||||  | | |||||||||| ||||||    
T  51735170 cgggcttaaacgaaatgacagcgtgcaaatatgacagttttggagggggaggcagtagccttactcgatgccattcactttgctgatgt 51735082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 51259936 - 51259663
Alignment:
Q  1 gatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggaga 100  Q
    |||||||||||||||||||| |||||||||||||| || |||  |  | ||| |  |||||| || ||||||||||||| ||||||||||||||||||||    
T  51259936 gatgcatggcagcaatggcaggaggttcataaacaaccctcatcatcgattgcgcaacacgggcagaatagagtgcaagctaacaactcagtttgggaga 51259837  T
Q  101 aaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggaca 200  Q
    ||||| | ||||| |||||||| |||||||||||||||||||| ||||||||| | ||| |||||||||| | ||||||||||||||| || |  || ||    
T  51259836 aaccgcgtgagacgtggttgaactgcaatgtggatgccgcgtttcatgaccgtcaacatattacatctttcgtatgttgtgttagagactctcgtgggca 51259737  T
Q  201 atttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttaga-gggggaggtagtagccttactc 273  Q
    ||| ||||||||||||||||||||| |||| ||||||| ||| ||||| || |||||||| ||| |||||||||    
T  51259736 attcattcgggctcaaacgaaatggcaacgagcaaatatgacagttttggaggggggaggcagttgccttactc 51259663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 56065410 - 56065682
Alignment:
Q  1 gatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggaga 100  Q
    |||||||||||||||||||| |||||||||||||| || ||   |  | |||||  |||||| || ||||||||||||| ||||||||||||||||||||    
T  56065410 gatgcatggcagcaatggcaggaggttcataaacaaccctcgtcatcgattgtgcaacacgggcagaatagagtgcaagctaacaactcagtttgggaga 56065509  T
Q  101 aaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggaca 200  Q
    ||| | | ||||| |||||||||||||||||||||| || ||| ||||||||| | ||| |||||||||| || |||||| ||||||| ||||  || ||    
T  56065510 aactgtgtgagacgtggttgaagtgcaatgtggatgtcgtgtttcatgaccgtcaacatattacatctttcgcgtgttgttttagagactcccgtgggca 56065609  T
Q  201 atttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactc 273  Q
    ||| ||||||||||||||||||||  |||| ||||||| ||| ||||| |||||||||| ||| |||||||||    
T  56065610 attcattcgggctcaaacgaaatgacaacgagcaaatatgacagttttggagggggaggcagttgccttactc 56065682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 64 - 258
Target Start/End: Complemental strand, 43840650 - 43840456
Alignment:
Q  64 cataatagagtgcaaggtaacaactcagtttgggagaaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatctta 163  Q
    ||||||||||||||||  ||||||| ||||||||||| ||||  |||||| |||||||||| ||| ||||||||||||||| |||| | |||||||||||    
T  43840650 cataatagagtgcaagacaacaacttagtttgggagagaccgcacgagacgtggttgaagttcaacgtggatgccgcgttctatgagcataaccatctta 43840551  T
Q  164 catcttttgcatgttgtgttagagattcccagggacaatttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggag 258  Q
    |||||||||| | |||||||||||| ||||  |||||||||||||||| ||||||||||||| | ||  |||||| ||| || || |||||||||    
T  43840550 catcttttgcgttttgtgttagagactcccgtggacaatttattcggggtcaaacgaaatggcagcggacaaatatgacagtgttggagggggag 43840456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 92 - 273
Target Start/End: Complemental strand, 41835626 - 41835445
Alignment:
Q  92 tttgggagaaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattc 191  Q
    ||||||||||| |||||||||| |||||||||||||||||||||||| |||||| ||| ||||||||| ||||| ||||||| |||||||||||||| ||    
T  41835626 tttgggagaaatcgagcgagacgtggttgaagtgcaatgtggatgccacgttccttgaacgtaaccatattacaacttttgcgtgttgtgttagagactc 41835527  T
Q  192 ccagggacaatttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactc 273  Q
     |   |||||||||||||||||||||| |||||  | |  ||||||| ||| ||||| |||||||| | |||||||||||||    
T  41835526 tcgcagacaatttattcgggctcaaacaaaatgacagctggcaaatatgacagttttggagggggatgcagtagccttactc 41835445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 161; Significance: 7e-86; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 88340 - 88612
Alignment:
Q  1 gatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggaga 100  Q
    |||||||| || ||||||||||| |||||||||||||| ||||||| ||||||   |||||  ||||||||||||||||| |||||| ||||||||||||    
T  88340 gatgcatgacaacaatggcaagatgttcataaacatccctcactaccggttgtacaacacgagcataatagagtgcaaggcaacaacacagtttgggaga 88439  T
Q  101 aaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggaca 200  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||| || |  || ||    
T  88440 aaccgagcgagacatggttgaagtgcaatgtggatgctgcgttccatgaccgtaaccatattacaacttttgcatgttgtgttagagactctcgcgggca 88539  T
Q  201 atttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactc 273  Q
    ||||||||||||||||| ||||||| || | ||||||| ||| ||||| |||||||||| |||||||||||||    
T  88540 atttattcgggctcaaatgaaatggcaatgggcaaatatgacagttttggagggggaggcagtagccttactc 88612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 2 - 272
Target Start/End: Complemental strand, 12131043 - 12130773
Alignment:
Q  2 atgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggagaa 101  Q
    |||||||||| ||||||||||||||||||||||| ||||||| || |||||||  ||||||    || ||||||||||||||||||||| ||||||||||    
T  12131043 atgcatggcaacaatggcaagaggttcataaacaaccatcaccaccggttgtgcaacacgggacaaacagagtgcaaggtaacaactcaatttgggagaa 12130944  T
Q  102 accgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggacaa 201  Q
    | |||||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||  ||||||||  |||||||||||||| ||||  || |||    
T  12130943 atcgagcgagacgtggttgaagtgcaatgtggatgccccgttccatgaccgtaaccatattctatcttttgggtgttgtgttagagactcccgcgggcaa 12130844  T
Q  202 tttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttact 272  Q
     ||||||||||||||||||||||  | || ||||||| ||  || || |||||||||| ||||||||||||    
T  12130843 attattcgggctcaaacgaaatgacagcgagcaaatatgatagtgttggagggggaggcagtagccttact 12130773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 34696308 - 34696014
Alignment:
Q  1 gatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggaga 100  Q
    ||||||||||| ||||||||||||||||||| ||| ||||||| | ||   |||   ||||  ||||||||| |||||||||||||||||||||||||||    
T  34696308 gatgcatggcaacaatggcaagaggttcatacacaaccatcaccattgccggtgcatcacgaacataatagaatgcaaggtaacaactcagtttgggaga 34696209  T
Q  101 aaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggaca 200  Q
    ||| | ||||| | |||||||||| ||| ||||||||| | |||||||||| ||| ||| ||||||||||||| ||||| |||||||| ||||  || ||    
T  34696208 aactgcgcgagtcgtggttgaagtacaacgtggatgccacattccatgaccataagcatattacatcttttgcgtgttgcgttagagactcccgtgggca 34696109  T
Q  201 atttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactcacttctattcactttgatgatgtc 297  Q
    |||||||||||||||| ||  |||| | || ||||||| ||| ||||| |||||||||| ||||||||||||||   | |||||||||| |||||||    
T  34696108 atttattcgggctcaatcg--atggcagcgggcaaatatgacagttttggagggggaggcagtagccttactcaaggccattcactttgctgatgtc 34696014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 34718720 - 34718426
Alignment:
Q  1 gatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggaga 100  Q
    ||||||||||| ||||||||||||||||||| ||| ||||||| | ||   |||   ||||  ||||||||| |||||||||||||||||||||||||||    
T  34718720 gatgcatggcaacaatggcaagaggttcatacacaaccatcaccattgccggtgcatcacgaacataatagaatgcaaggtaacaactcagtttgggaga 34718621  T
Q  101 aaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggaca 200  Q
    ||| | ||||| | |||||||||| ||| ||||||||| | |||||||||| ||| ||| ||||||||||||| ||||| |||||||| ||||  || ||    
T  34718620 aactgcgcgagtcgtggttgaagtacaacgtggatgccacattccatgaccataagcatattacatcttttgcgtgttgcgttagagactcccgtgggca 34718521  T
Q  201 atttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactcacttctattcactttgatgatgtc 297  Q
    |||||||||||||||| ||  |||| | || ||||||| ||| ||||| |||||||||| ||||||||||||||   | |||||||||| |||||||    
T  34718520 atttattcgggctcaatcg--atggcagcgggcaaatatgacagttttggagggggaggcagtagccttactcaaggccattcactttgctgatgtc 34718426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 2 - 273
Target Start/End: Complemental strand, 18345879 - 18345621
Alignment:
Q  2 atgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggagaa 101  Q
    ||||||||||| ||||||||||||||||||||||||  |||| || |||||||  |||||| || |||||||||||||            ||||| ||||    
T  18345879 atgcatggcagtaatggcaagaggttcataaacatcattcaccaccggttgtgcaacacgggcagaatagagtgcaag------------tttggaagaa 18345792  T
Q  102 accgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggacaa 201  Q
    ||||| ||||||||||||||||||||||||||| ||  |||||||||| ||||||||| |||| |||||||| |||||||||||||| | ||  ||  ||    
T  18345791 accgaacgagacatggttgaagtgcaatgtggacgcaacgttccatgagcgtaaccatattacttcttttgcgtgttgtgttagagacttccgtgggtaa 18345692  T
Q  202 tttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactc 273  Q
    |||||| |  |||||||||||||||||||  |||||| ||| ||||| |||||||||| |||||||||||||    
T  18345691 tttatttgaactcaaacgaaatggtaacggacaaatatgacagtttt-gagggggaggcagtagccttactc 18345621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 67 - 258
Target Start/End: Complemental strand, 44017658 - 44017467
Alignment:
Q  67 aatagagtgcaaggtaacaactcagtttgggagaaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacat 166  Q
    |||| |||||||||||||| || ||||| | |||| |||||||||||||||||||||||||||| | || ||||||||  ||| | | ||||||||||||    
T  44017658 aataaagtgcaaggtaacagctaagttttgaagaagccgagcgagacatggttgaagtgcaatgcgaattccgcgttctgtgatcatgaccatcttacat 44017559  T
Q  167 cttttgcatgttgtgttagagattcccagggacaatttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggag 258  Q
    |||| || |||||||||||||| ||||  || |||||||||||||||||||  |||||  | |||||||||| ||| ||||| |||||||||    
T  44017558 ctttcgcgtgttgtgttagagactcccgtgggcaatttattcgggctcaaataaaatgacaccgtgcaaatatgacagttttggagggggag 44017467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 26198472 - 26198742
Alignment:
Q  1 gatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggaga 100  Q
    |||||||| || ||||| ||||||||||||||   ||| |||| ||||| ||||  |||||  || |||||| ||||| |||||| || |||| ||||||    
T  26198472 gatgcatgacatcaatgacaagaggttcataa---tcc-tcaccactgggtgtgcaacacgaacagaatagaatgcaaagtaacagcttagttcgggaga 26198567  T
Q  101 aaccgagcgagacatggttgaagtgcaatgtggatgccgcgttc------catgaccgtaaccatcttacatcttttgcatgttgtgttagagattccca 194  Q
    ||  |  |||||| ||||||||||| | |||||||| |||||||      ||| ||| ||| ||| || |||||||||  || ||||||||||| ||       
T  26198568 aattgcacgagacgtggttgaagtgtattgtggatgtcgcgttccattttcattaccataatcatattgcatcttttgtgtgctgtgttagagactcatg 26198667  T
Q  195 gggacaatttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagcctt 269  Q
     || ||||||||||| |||||||  |||||||| ||  |||||| ||| ||||| |||||||| | |||||||||    
T  26198668 tgggcaatttattcgagctcaaataaaatggtagcgaacaaatatgacagttttggagggggatgcagtagcctt 26198742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 201 - 273
Target Start/End: Original strand, 9709910 - 9709982
Alignment:
Q  201 atttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactc 273  Q
    |||||||| |||||||||||||||| ||||  |||||| ||| ||||| |||||||||| ||| |||||||||    
T  9709910 atttattcaggctcaaacgaaatggcaacgaacaaatatgacagttttggagggggaggcagttgccttactc 9709982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 160; Significance: 3e-85; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 7127004 - 7127299
Alignment:
Q  1 gatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggaga 100  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||| |||||||  |||| |||| ||||| | |||||||||||||| |||||||||||    
T  7127004 gatgcatggcagcaatggcatgaggttcataaacatccctcactaccggttgtgcaacacagccagaatagggggcaaggtaacaacttagtttgggaga 7127103  T
Q  101 aaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggaca 200  Q
    | ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||| | |||||||||||||||||| || | |||  |    
T  7127104 agccgagcgagacatggttgaagtggaatgtggatgccgcgttccatgaacgtaaccgtcttacatcctctgcatgttgtgttagagactctcgggggaa 7127203  T
Q  201 atttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactcacttctattcactttgatgatgt 296  Q
    ||||||||| || |||| ||||||| |||| ||||||| ||  ||||| ||||||||||||||||||||||||  | |||||||||||| ||||||    
T  7127204 atttattcgtgcacaaatgaaatggaaacgggcaaatatgaaagttttggagggggaggtagtagccttactcgatgctattcactttgctgatgt 7127299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 478462 - 478190
Alignment:
Q  1 gatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||||||||  |||| | || |||||||| |||||||||| |||| |||||||||    
T  478462 gatgcatggcagcaatggcaagaggttcataaacatccatcaccagtggttgtgcaacacaggcaaaatagagtccaaggtaacatctcaatttgggaga 478363  T
Q  101 aaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggaca 200  Q
    |||| |||||||  ||||||||||| |||||||||||  ||||||||||||  |||||||| ||||||||||  |||||||||||||||| ||| || ||    
T  478362 aaccaagcgagatgtggttgaagtgtaatgtggatgcaacgttccatgaccacaaccatctaacatcttttgtgtgttgtgttagagatttccatggtca 478263  T
Q  201 atttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactc 273  Q
    |||||| ||||||||||| |||||| |||| ||||||| ||| ||||| |||||||||| |||||||||||||    
T  478262 atttatccgggctcaaacaaaatggcaacgggcaaatatgacagttttggagggggaggcagtagccttactc 478190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 4 - 296
Target Start/End: Complemental strand, 8451526 - 8451234
Alignment:
Q  4 gcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggagaaac 103  Q
    |||||||| ||||||||||||||||||||||| ||||||| || |||||||  ||||   || ||||||||||||||| | |  ||| ||||||||||||    
T  8451526 gcatggcaacaatggcaagaggttcataaacagccatcaccacaggttgtgcaacaccagcaaaatagagtgcaaggtcatagttcaatttgggagaaac 8451427  T
Q  104 cgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggacaatt 203  Q
    || ||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||    ||||||||    
T  8451426 cgtgcgagacgtggttgaagtgtaatgtggatgccgcgttccatgaccgtaaccattttacatcttttggatgttgtgttagagactcttgtggacaatt 8451327  T
Q  204 tattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactcacttctattcactttgatgatgt 296  Q
    ||||||||||||||| ||| || | || ||||||| ||| || || |||||||||| |||||| ||||||  ||| |||||||| | ||||||    
T  8451326 tattcgggctcaaacaaaaaggaagcgggcaaatatgacagtgttggagggggaggcagtagctttactcgattccattcacttcgctgatgt 8451234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 40589121 - 40588864
Alignment:
Q  1 gatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggaga 100  Q
    ||||||||||| ||||||||||||||||||||||| || |||| || |||||||  |||||| ||||| |||||||||||||||||||||||||||||||    
T  40589121 gatgcatggcaacaatggcaagaggttcataaacagccctcaccaccggttgtgcaacacgggcataacagagtgcaaggtaacaactcagtttgggaga 40589022  T
Q  101 aaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggaca 200  Q
    ||||||| ||||| |||||||||||||| |||||||||||||||||||| ||||||||| | ||| ||||||| ||| |             ||||  ||    
T  40589021 aaccgagtgagacgtggttgaagtgcaacgtggatgccgcgttccatgaacgtaaccatataacaacttttgcttgtag-------------cagg--ca 40588937  T
Q  201 atttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactc 273  Q
    ||||||||||||||||||||||||| | || |||||||  || ||||| |||||||||| ||||||| |||||    
T  40588936 atttattcgggctcaaacgaaatggcagcgggcaaatataacagttttggagggggaggcagtagccgtactc 40588864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 2 - 272
Target Start/End: Original strand, 23853726 - 23853984
Alignment:
Q  2 atgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggagaa 101  Q
    ||||||| || ||||||||||||||||||||||||   |||| || |||||||  |||| | ||||||||||||||||            ||||||||||    
T  23853726 atgcatgacaacaatggcaagaggttcataaacattattcaccacaggttgtgcaacacaggcataatagagtgcaag------------tttgggagaa 23853813  T
Q  102 accgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggacaa 201  Q
    ||||| |||||| |||||||||||| ||||||| ||||||||||||||||||||| || ||||||||||||| |||| ||||||||| ||||  || |||    
T  23853814 accgaacgagacgtggttgaagtgcgatgtggacgccgcgttccatgaccgtaactatattacatcttttgcgtgttatgttagagactcccgtgggcaa 23853913  T
Q  202 tttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttact 272  Q
    |||||||||| ||||||||||||  | ||   ||||| ||| ||||| ||||| |||| ||||||||||||    
T  23853914 tttattcgggttcaaacgaaatgacagcggaaaaatatgacagttttggagggtgaggcagtagccttact 23853984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 110 - 273
Target Start/End: Original strand, 13414913 - 13415076
Alignment:
Q  110 agacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggacaatttattcg 209  Q
    |||| |||||||||||||||||||||| || ||||||||| ||||||||| ||||| ||||||  |||| | ||||||| |  |  || |||||||||||    
T  13414913 agacgtggttgaagtgcaatgtggatgtcgtgttccatgaacgtaaccatattacaacttttgtgtgtttttttagagactttcgcgggcaatttattcg 13415012  T
Q  210 ggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactc 273  Q
    |||||||||||||||| | ||  |||||| ||| ||||| |||||||||| |||||||||||||    
T  13415013 ggctcaaacgaaatggcagcggacaaatatgacagttttggagggggaggcagtagccttactc 13415076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 154 - 296
Target Start/End: Complemental strand, 185842 - 185702
Alignment:
Q  154 aaccatcttacatcttttgcatgttgtgttagagattcccagggacaatttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagg 253  Q
    |||| ||||||||||| |||| ||||||| ||||| ||| ||||| |||||||  ||||||||||||||||| |||| ||||||| ||| ||||| || |    
T  185842 aaccgtcttacatcttctgcacgttgtgtaagagactccgaggga-aatttatctgggctcaaacgaaatggaaacgggcaaatatgacagttttgga-g 185745  T
Q  254 gggaggtagtagccttactcacttctattcactttgatgatgt 296  Q
    |||||| |||||||||||||  | |||||||||||| ||||||    
T  185744 gggaggaagtagccttactcgatactattcactttgttgatgt 185702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 140; Significance: 2e-73; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 36733474 - 36733772
Alignment:
Q  1 gatgcatggcagcaatggcaagaggttcataaacatcca-tcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggag 99  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||| |||||||  ||| ||||| |||||| |||||||||| |||| ||||| ||||    
T  36733474 gatgcatggcagcaatggcaagaggttcataaacatcccctcactaccggttgtgcaacaaggccaaaatagaatgcaaggtaataactgagtttcggag 36733573  T
Q  100 aaaccgagcgagacatggttgaagtgcaat--gtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccaggg 197  Q
    ||||||||||||||||||||||||||||||  |||||||||||||| ||||||  ||||||||||||| ||||||  |||||||||||||| || |  ||    
T  36733574 aaaccgagcgagacatggttgaagtgcaatatgtggatgccgcgtttcatgactataaccatcttacaccttttgtgtgttgtgttagagactctcgtgg 36733673  T
Q  198 acaatttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactcacttctattcactttgatgatgt 296  Q
    ||||||||||||||||||||| |||||  |||| | ||||| | | ||||| |||||||||| ||||| |||||||| |  ||||||||||| ||||||    
T  36733674 acaatttattcgggctcaaacaaaatgacaacgggtaaatatggcagttttggagggggaggcagtagtcttactcaatgttattcactttgctgatgt 36733772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 25682432 - 25682704
Alignment:
Q  1 gatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggaga 100  Q
    |||||||||||||||||||||||| |||||||||| || | |   | | |||||  ||| ||  | |||||||||||||| || |||||| |||||||||    
T  25682432 gatgcatggcagcaatggcaagagattcataaacaacccttatcgccgattgtgcaacatgggtagaatagagtgcaaggcaagaactcaatttgggaga 25682531  T
Q  101 aaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggaca 200  Q
    ||||| | ||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||  || ||    
T  25682532 aaccgtgtgagacatggttgaagtgcaatgtggatgccgtgtttcatgaacgtaaccatcttacatcttttgcgtgttgtgttagagactcccgtgggca 25682631  T
Q  201 atttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactc 273  Q
    ||||||  ||||||||||||||||| |||| ||||||| ||| || || |||||||||| |||||||||||||    
T  25682632 atttatctgggctcaaacgaaatggcaacgggcaaatatgacagtgttggagggggaggcagtagccttactc 25682704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 51113096 - 51113368
Alignment:
Q  1 gatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggaga 100  Q
    |||||||||||||||||||| |||||||||||||| || |||  |  | |||||  |||||| || ||||||||||||| ||||||||||||||||||||    
T  51113096 gatgcatggcagcaatggcaggaggttcataaacagccctcatcatcgattgtgcaacacgggcagaatagagtgcaagctaacaactcagtttgggaga 51113195  T
Q  101 aaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggaca 200  Q
    || || | ||||| ||||| ||||||||||||||||||| ||| ||||||||| | ||| |||||||||| || |||||||||||||| ||||  || ||    
T  51113196 aatcgtgtgagacgtggttaaagtgcaatgtggatgccgtgtttcatgaccgtcaacatattacatctttcgcgtgttgtgttagagactcccgtgggca 51113295  T
Q  201 atttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactc 273  Q
    ||| |||||| |||||||||||||| |||| |||||||  || ||||| |||||||||| ||| |||||||||    
T  51113296 attcattcggactcaaacgaaatggcaacgagcaaatataaccgttttggagggggaggcagttgccttactc 51113368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 16 - 273
Target Start/End: Complemental strand, 48950115 - 48949858
Alignment:
Q  16 tggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggagaaaccgagcgagacat 115  Q
    ||||| |||||||||||||| || |||  |  | |||||  |||||| || ||||||||||||| ||||||||||| ||||||||||||| | ||||| |    
T  48950115 tggcaggaggttcataaacaaccctcatcatcgattgtgcaacacgggcagaatagagtgcaagctaacaactcagattgggagaaaccgcgtgagacgt 48950016  T
Q  116 ggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggacaatttattcgggctca 215  Q
    |||||||||||||||||||||||||||| ||||||||| | ||| |||||||||| || |||||||||||||| ||||   | ||||| |||||||||||    
T  48950015 ggttgaagtgcaatgtggatgccgcgtttcatgaccgtcaacatattacatctttcgcgtgttgtgttagagactcccgttggcaattcattcgggctca 48949916  T
Q  216 aacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactc 273  Q
    |||||||||| |||| ||||||| ||  ||||| |||||||||| ||| |||||||||    
T  48949915 aacgaaatggcaacgagcaaatatgaaagttttggagggggaggcagttgccttactc 48949858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 4394940 - 4395211
Alignment:
Q  1 gatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggaga 100  Q
    |||||||| || ||||||||||||||| |||||||||| || |||| |||  ||  ||||   ||||| ||||||||||  |||||||||||||||||||    
T  4394940 gatgcatgacaacaatggcaagaggtttataaacatccctcgctaccggtaatgcaacacatgcataacagagtgcaagacaacaactcagtttgggaga 4395039  T
Q  101 aaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggaca 200  Q
    ||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||| | ||| |||||||||| ||||||||||| || |  || ||    
T  4395040 aaccgagcgagacgtggctgaagtgcaatgtggaagccgcgttccatgaccgtaaccatatcacaacttttgcatgctgtgttagagactctcgtgggca 4395139  T
Q  201 atttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactc 273  Q
    |||||| ||||||||| |||||||| | || ||||||| ||  ||||| || ||||||| | |||||||||||    
T  4395140 atttatccgggctcaatcgaaatggcagcgggcaaatatgagagtttt-gaaggggaggcactagccttactc 4395211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 5609120 - 5609337
Alignment:
Q  1 gatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggaga 100  Q
    ||||||||| ||||||||||||||||||||||||  ||  |||||  |||  |   |||| | ||||||||||||||||| |||||||||||||||||||    
T  5609120 gatgcatggtagcaatggcaagaggttcataaacggcctccactatcggtaatacaacacaggcataatagagtgcaaggcaacaactcagtttgggaga 5609219  T
Q  101 aaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggaca 200  Q
    ||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||| ||||| |||| || || |||| |||||| || || |  ||    
T  5609220 aaccgagcgagacgtggttgaagtgcaatgtggatgtcgcgttccatgactgtaaccatattacaactttcgcgtgctgtgctagagactcacacgagca 5609319  T
Q  201 atttattcgggctcaaac 218  Q
    ||||||||||||||||||    
T  5609320 atttattcgggctcaaac 5609337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 24538290 - 24538544
Alignment:
Q  1 gatgcatggcagcaatggcaagaggtt-cataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggag 99  Q
    |||||||| || ||||||||||||||| ||||||||||| |||| ||  ||||||  |||  | || ||||||||||||||||||| ||||||||| |||    
T  24538290 gatgcatgacaacaatggcaagaggtttcataaacatccctcaccaccagttgtgcaacataggcagaatagagtgcaaggtaacatctcagtttgagag 24538389  T
Q  100 aaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggac 199  Q
    ||||| || ||||| |||| ||| ||||||||||||||||||||| || ||||||||||  ||| ||||||||  |||||||||||||| ||||  |||     
T  24538390 aaaccaagtgagacctggtcgaaatgcaatgtggatgccgcgttctataaccgtaaccaagttagatcttttgtgtgttgtgttagagactcccgtggat 24538489  T
Q  200 aatttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagaggg 254  Q
    |||||||||||||||||||||| ||| | |  ||||||||||| ||||| |||||    
T  24538490 aatttattcgggctcaaacgaattggcagcaggcaaatacgacagttttggaggg 24538544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 90 - 272
Target Start/End: Original strand, 44527123 - 44527305
Alignment:
Q  90 agtttgggagaaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagat 189  Q
    ||||||||||||||||| |||| ||||||| |||||||||||||| ||||||||||||||| |||||||| ||||||||||||| ||||||||||||||     
T  44527123 agtttgggagaaaccgaccgagtcatggttaaagtgcaatgtggacgccgcgttccatgactgtaaccatattacatcttttgcgtgttgtgttagagac 44527222  T
Q  190 tcccagggacaatttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttact 272  Q
    ||    || |||||||||||||||||||| |||||| | ||  |||||| ||| ||||| |||||||||| ||||||||||||    
T  44527223 tcttgtgggcaatttattcgggctcaaacaaaatggcagcggacaaatatgacagttttggagggggaggcagtagccttact 44527305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 90 - 273
Target Start/End: Original strand, 52109324 - 52109507
Alignment:
Q  90 agtttgggagaaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagat 189  Q
    |||||||||||||||||   |||| ||||||||||| |||||||| |  | ||||||||||||||| ||||||| ||||||||||||||||||||||||     
T  52109324 agtttgggagaaaccgacaaagacgtggttgaagtgtaatgtggacgttgtgttccatgaccgtaatcatcttatatcttttgcatgttgtgttagagac 52109423  T
Q  190 tcccagggacaatttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactc 273  Q
    |||   ||||||||||||| |||||||||||||||| | || ||||||| ||   |||| |||||||| | |||||||||||||    
T  52109424 tcctgtggacaatttattcaggctcaaacgaaatggcagcgggcaaatatgatcattttggagggggatgcagtagccttactc 52109507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 132 - 273
Target Start/End: Original strand, 48166149 - 48166290
Alignment:
Q  132 ggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggacaatttattcgggctcaaacgaaatggtaacgt 231  Q
    ||||||| |||||||||||||||||||||||||||||||||  |||||||||||||| ||||  || ||||||||||||||||||| ||||||| | ||     
T  48166149 ggatgccacgttccatgaccgtaaccatcttacatcttttgtgtgttgtgttagagactcccgtggtcaatttattcgggctcaaatgaaatggcagcga 48166248  T
Q  232 gcaaatacgactgttttagagggggaggtagtagccttactc 273  Q
    ||||||| ||| ||||| ||| |||||  | |||||||||||    
T  48166249 gcaaatatgacagttttggagtgggagacaatagccttactc 48166290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 98 - 273
Target Start/End: Complemental strand, 16817108 - 16816934
Alignment:
Q  98 agaaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccaggg 197  Q
    |||||||||| ||||  |||||||||||||||| ||| ||||||||||||| | |||||||| ||||||||||||  | |||| ||||||| || |  |     
T  16817108 agaaaccgagtgagatgtggttgaagtgcaatgcggacgccgcgttccatgtctgtaaccatattacatcttttgtgtattgttttagagactctcgcgt 16817009  T
Q  198 acaatttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactc 273  Q
     ||||||||||| |||||| | |||||| |  | ||||||| |||  |||| || ||||||| |||||||||||||    
T  16817008 gcaatttattcgagctcaatcaaaatggcagtgggcaaatatgacaattttgga-ggggaggcagtagccttactc 16816934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 70 - 118
Target Start/End: Original strand, 17507308 - 17507356
Alignment:
Q  70 agagtgcaaggtaacaactcagtttgggagaaaccgagcgagacatggt 118  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||    
T  17507308 agagtgcaaggtaatatctcagtttgggagaaaccgagcgagacatggt 17507356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 44527046 - 44527078
Alignment:
Q  1 gatgcatggcagcaatggcaagaggttcataaa 33  Q
    ||||||||||| |||||||||||||||||||||    
T  44527046 gatgcatggcaacaatggcaagaggttcataaa 44527078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 134; Significance: 9e-70; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 14679940 - 14680215
Alignment:
Q  1 gatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggaga 100  Q
    ||||||||||  |||||| |||||||||||||||| |  |||| ||| ||||||  |||||  |||||||||||||||||||||||||||||||||||||    
T  14679940 gatgcatggccacaatggaaagaggttcataaacaactctcaccactagttgtgcaacacgagcataatagagtgcaaggtaacaactcagtttgggaga 14680039  T
Q  101 aaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattccc---aggg 197  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||  |||||||||||||||||||||||||||| ||||     ||    
T  14680040 aaccgagcgagacatggttgaagtgcaatgtggataccgcgttccatgaccgcaaccacattacatcttttgcatgttgtgttagagactcccgcggcgg 14680139  T
Q  198 acaatttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactc 273  Q
     |||||||||  |||||||| ||||||| | || | ||||| ||| || || |||||||||| |||||||||||||    
T  14680140 gcaatttattatggctcaaatgaaatggcagcgggaaaatatgacagtattggagggggaggcagtagccttactc 14680215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 28106920 - 28107191
Alignment:
Q  1 gatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggaga 100  Q
    ||||||||||| |||||||||||||||||||||||||  |||| | ||||||||  ||||   || ||||||||||||||||||| ||||||||||||||    
T  28106920 gatgcatggcaacaatggcaagaggttcataaacatctttcaccattggttgtgcaacacatgcaaaatagagtgcaaggtaacatctcagtttgggaga 28107019  T
Q  101 aaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggaca 200  Q
    |||| | |||||| |||||||||||||| | ||| ||| |||||||||| |||||||||||||||||||| |  |||||||||||||| ||||  |||||    
T  28107020 aaccaaacgagacgtggttgaagtgcaacgaggaagccacgttccatgatcgtaaccatcttacatctttcgtgtgttgtgttagagactcccgtggaca 28107119  T
Q  201 atttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttact 272  Q
    |||||||| |||||||||||||||| | ||  || ||| ||| ||||| |||||||||| ||||||||||||    
T  28107120 atttattcaggctcaaacgaaatggcagcggacagatatgacagttttggagggggaggcagtagccttact 28107191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 81 - 295
Target Start/End: Complemental strand, 15606320 - 15606106
Alignment:
Q  81 taacaactcagtttgggagaaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgt 180  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| || || || ||||||||| ||||||||||| | ||||||    
T  15606320 taacaactcagtttgggagaaaccgcacgagacatggttgaagtgcaatgtggatgccgcatttcacgatcgtaaccatattacatctttttcgtgttgt 15606221  T
Q  181 gttagagattcccagggacaatttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactcacttcta 280  Q
    |||||||| ||||| || ||| |||||||||||||||| |||||| | || | ||| | ||| ||||| |||||||||| |||||||||||||  | | |    
T  15606220 gttagagactcccatgggcaacttattcgggctcaaacaaaatggcagcgggaaaacatgacagttttggagggggaggcagtagccttactcgatgcca 15606121  T
Q  281 ttcactttgatgatg 295  Q
    ||||||||| |||||    
T  15606120 ttcactttgttgatg 15606106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 67 - 171
Target Start/End: Complemental strand, 11731989 - 11731885
Alignment:
Q  67 aatagagtgcaaggtaacaactcagtttgggagaaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacat 166  Q
    |||| |||||||||||||||||||| ||||||||||| ||||||||| |||| |||||||||||| |||| ||| ||||||||| ||||| || ||||||    
T  11731989 aatatagtgcaaggtaacaactcagcttgggagaaactgagcgagacgtggtggaagtgcaatgtagatgacgcattccatgactgtaacaatattacat 11731890  T
Q  167 ctttt 171  Q
    |||||    
T  11731889 ctttt 11731885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 30802376 - 30802209
Alignment:
Q  1 gatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggaga 100  Q
    |||||||| || |||||| ||||  |||||||||| || |||| |  |||||||  |||| | || |||||||||||||||| ||||||||||||||| |    
T  30802376 gatgcatgacaacaatggtaagacattcataaacagccctcaccaacggttgtggaacacaggcagaatagagtgcaaggtaccaactcagtttgggaaa 30802277  T
Q  101 aaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatct 168  Q
    |||  |||||||  | ||| ||||||| |||||||||||| ||| ||||  |||||||||||||||||    
T  30802276 aactaagcgagaggtagttaaagtgcattgtggatgccgcattcaatgaatgtaaccatcttacatct 30802209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 136 - 273
Target Start/End: Complemental strand, 15053446 - 15053309
Alignment:
Q  136 gccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggacaatttattcgggctcaaacgaaatggtaacgtgcaa 235  Q
    |||||||| |||| | |||||||||||||||||||||| |||||||||||||| | |   ||||||||||||||||||||||| | |||  | || | ||    
T  15053446 gccgcgtttcatgtcggtaaccatcttacatcttttgcgtgttgtgttagagacttcagtggacaatttattcgggctcaaacaagatgacagcgggtaa 15053347  T
Q  236 atacgactgttttagagggggaggtagtagccttactc 273  Q
    ||| ||  || || |||||||||| |||||||||||||    
T  15053346 atatgatagtgttggagggggaggcagtagccttactc 15053309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 19364351 - 19364217
Alignment:
Q  1 gatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggaga 100  Q
    |||||||| || ||||||| ||||||||||||||| || |||| |  |  ||||  |||||  || ||| ||||||||||||||||||||||||||||||    
T  19364351 gatgcatgacaacaatggcgagaggttcataaacaaccctcaccaacgcatgtgcaacacgagcaaaatcgagtgcaaggtaacaactcagtttgggaga 19364252  T
Q  101 aaccgagcgagacatggttgaagtgcaatgtggatg 136  Q
    ||| ||||||||  ||||| ||||||| ||||||||    
T  19364251 aactgagcgaga-gtggttaaagtgcattgtggatg 19364217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 29368442 - 29368365
Alignment:
Q  1 gatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaa 78  Q
    |||||||| ||||||||||||||||||||||||||||  ||| ||  |||||||| |||||  || ||||||||||||    
T  29368442 gatgcatgacagcaatggcaagaggttcataaacatcattcattatcggttgtgtaacacgagcacaatagagtgcaa 29368365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 199 - 272
Target Start/End: Complemental strand, 30802199 - 30802126
Alignment:
Q  199 caatttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttact 272  Q
    ||||||||||||||| |||| |||||| | || ||||||| ||| ||||| | |||||||| ||||||||||||    
T  30802199 caatttattcgggcttaaacaaaatggcagcgggcaaatatgacagttttggtgggggaggcagtagccttact 30802126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 101; Significance: 5e-50; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 42340682 - 42340411
Alignment:
Q  1 gatgcatggcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggaga 100  Q
    |||||||| || |||||||||||| |||||||||| || |||| || |||||||  |||||  || ||||||||  |||| |||||||||||||| ||||    
T  42340682 gatgcatgacaacaatggcaagagattcataaacagccctcaccaccggttgtgcaacacgtgcagaatagagtctaaggcaacaactcagtttgagaga 42340583  T
Q  101 aaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggaca 200  Q
    ||||| ||||||| ||||||||||||||||||||||  | |||| ||| | | |||||||||||||||||||| |||||||||||||| || |  |||||    
T  42340582 aaccgtgcgagacgtggttgaagtgcaatgtggatgttg-gttctatgtcggcaaccatcttacatcttttgcgtgttgtgttagagactctcgtggaca 42340484  T
Q  201 atttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttactc 273  Q
    |||||||||||||||||| |||||| | || ||| ||| ||| || || |||||||||| | ||||| |||||    
T  42340483 atttattcgggctcaaacaaaatggcagcgggcagatatgacagtgttggagggggaggcaatagccctactc 42340411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 90 - 272
Target Start/End: Original strand, 53496902 - 53497084
Alignment:
Q  90 agtttgggagaaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagat 189  Q
    ||||||||||||||||| |||| ||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||     
T  53496902 agtttgggagaaaccgaccgagtcatggttaaagtgcaatgtggacgccgcgttccatgaccgtaaccatattacatcttttgcgtgttgtgttagagac 53497001  T
Q  190 tcccagggacaatttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagccttact 272  Q
    ||    || |||||||||||||||||||| |||||  | ||  |||||  ||| ||||| |||||||||| ||||||||||||    
T  53497002 tcttgtgggcaatttattcgggctcaaacaaaatgacagcggacaaatgtgacagtttttgagggggaggcagtagccttact 53497084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 67 - 272
Target Start/End: Original strand, 46007148 - 46007354
Alignment:
Q  67 aatagagtgcaaggtaacaactcagtttgggagaaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacat 166  Q
    |||| |||||| | |||||||||||||||||| ||||  |||||||| ||||||||||||||||||||||||| ||||||| |  |||||||||||| ||    
T  46007148 aataaagtgcaggataacaactcagtttgggaaaaacaaagcgagacgtggttgaagtgcaatgtggatgccgtgttccattattgtaaccatcttatat 46007247  T
Q  167 cttttgcatgttgtg-ttagagattcccagggacaatttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtag 265  Q
    ||||||| |||| || ||||||| || |  ||| |||||||||||||||||||||||||| | || |||||||||||  ||||  ||||||||  |||||    
T  46007248 cttttgcgtgttttgtttagagactctcgtggaaaatttattcgggctcaaacgaaatggcagcgggcaaatacgacaattttttagggggagacagtag 46007347  T
Q  266 ccttact 272  Q
    |||||||    
T  46007348 ccttact 46007354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 67 - 273
Target Start/End: Original strand, 55199358 - 55199564
Alignment:
Q  67 aatagagtgcaaggtaacaactcagtttgggagaaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacat 166  Q
    |||| |||||||| ||||||||||||||||||||||||| | ||||  ||||||| |||||||||||||||| |||| ||||||||| |  || ||||||    
T  55199358 aataaagtgcaagctaacaactcagtttgggagaaaccgcgtgagatgtggttgacgtgcaatgtggatgccacgtttcatgaccgtcaatatattacat 55199457  T
Q  167 cttttgcatgttgtgttagagattcccagggacaatttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagc 266  Q
    |||| || |||||||||||||| ||||  || ||||| ||||||||||||||||||||  | |    ||||| ||| ||||| |||||||||| ||| ||    
T  55199458 ctttcgcgtgttgtgttagagactcccgtgggcaattcattcgggctcaaacgaaatgacagctgataaatatgacagttttggagggggaggcagttgc 55199557  T
Q  267 cttactc 273  Q
    |||||||    
T  55199558 cttactc 55199564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 57 - 167
Target Start/End: Original strand, 1070850 - 1070960
Alignment:
Q  57 acacggccataatagagtgcaaggtaacaactcagtttgggagaaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaac 156  Q
    |||||| |||||||||| ||||||||| | |||||||| |||||||||| |||||||||||||||| |||||||||||||  || |||||||| ||||||    
T  1070850 acacggacataatagagagcaaggtaaaacctcagtttaggagaaaccgcgcgagacatggttgaactgcaatgtggatgttgccttccatgatcgtaac 1070949  T
Q  157 catcttacatc 167  Q
    |||||||||||    
T  1070950 catcttacatc 1070960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 68 - 273
Target Start/End: Original strand, 2615341 - 2615546
Alignment:
Q  68 atagagtgcaaggtaacaactcagtttgggagaaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatc 167  Q
    ||||||||||| |||||   ||||||||||||||| || || |||| |||||||| |||||||||||| ||||||| ||||| | ||||||| ||||||     
T  2615341 atagagtgcaaagtaacggttcagtttgggagaaatcgtgcaagacgtggttgaaatgcaatgtggataccgcgtttcatgatcataaccatattacatt 2615440  T
Q  168 ttttgcatgttgtgttagagattcccagggacaatttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagagggggaggtagtagcc 267  Q
    |||||   ||||||||||||  |     || ||||| ||||||||||||||||| ||| | || ||||||| ||  ||||| |||||||||| |||||||    
T  2615441 ttttgtgcgttgtgttagaggcttttgtgggcaattcattcgggctcaaacgaattggcagcgggcaaatatgatagttttggagggggaggcagtagcc 2615540  T
Q  268 ttactc 273  Q
    ||||||    
T  2615541 ttactc 2615546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 115 - 222
Target Start/End: Original strand, 48227308 - 48227415
Alignment:
Q  115 tggttgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggacaatttattcgggctc 214  Q
    |||||||||| ||||||||||||||| || ||| ||||||||||| ||||||||||||| |||||||||||||| || |  || |||||||||||||||     
T  48227308 tggttgaagtacaatgtggatgccgcatttcattaccgtaaccatgttacatcttttgcgtgttgtgttagagactctcgcgggcaatttattcgggctt 48227407  T
Q  215 aaacgaaa 222  Q
    ||||||||    
T  48227408 aaacgaaa 48227415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 9 - 105
Target Start/End: Complemental strand, 36310894 - 36310798
Alignment:
Q  9 gcagcaatggcaagaggttcataaacatccatcactactggttgtgtcacacggccataatagagtgcaaggtaacaactcagtttgggagaaaccg 105  Q
    ||||||||||||||||||||||||||| || |||| |||| |||||  ||||||||||||||||||||||||| |||| ||||||||  ||||||||    
T  36310894 gcagcaatggcaagaggttcataaacaaccctcacaactgattgtgcaacacggccataatagagtgcaaggtgacaattcagtttgaaagaaaccg 36310798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 133 - 273
Target Start/End: Complemental strand, 647485 - 647345
Alignment:
Q  133 gatgccgcgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagaga-ttcccagggacaatttattcgggctcaaacgaaatggtaacgt 231  Q
    ||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||| ||| |  || |||||| | |||||||||||||||||| | ||     
T  647485 gatgccgcgttccatgagcgtaaccatattacatcttttgcgtgttgtgttagagacttctctagg-caatttttccgggctcaaacgaaatggcagcgg 647387  T
Q  232 gcaaatacgactgttttagagggggaggtagtagccttactc 273  Q
    || |||| ||| ||| | |||||||||| || ||||||||||    
T  647386 gctaatatgacagttatggagggggaggcagcagccttactc 647345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 140 - 272
Target Start/End: Complemental strand, 27941261 - 27941129
Alignment:
Q  140 cgttccatgaccgtaaccatcttacatcttttgcatgttgtgttagagattcccagggacaatttattcgggctcaaacgaaatggtaacgtgcaaatac 239  Q
    |||| ||||| ||||||||| ||| || |||||| |||||| |||||||||| |  ||||||||||||||| ||||||| |||||| | ||  ||||||     
T  27941261 cgtttcatgatcgtaaccatattatattttttgcgtgttgtattagagattctcgaggacaatttattcggactcaaacaaaatggcagcggacaaatat 27941162  T
Q  240 gactgttttagagggggaggtagtagccttact 272  Q
    ||  ||||| |||||||||| ||||||||||||    
T  27941161 gatagttttggagggggaggcagtagccttact 27941129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 53496825 - 53496857
Alignment:
Q  1 gatgcatggcagcaatggcaagaggttcataaa 33  Q
    ||||||||||||||||| |||||||||||||||    
T  53496825 gatgcatggcagcaatgacaagaggttcataaa 53496857  T

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Target: scaffold0446 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0446
Description:

Target: scaffold0446; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 57 - 273
Target Start/End: Original strand, 23 - 239
Alignment:
Q  57 acacggccataatagagtgcaaggtaacaactcagtttgggagaaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaac 156  Q
    |||||| || || ||| |||||| ||||||||||||||||||||||| | | ||||| |||||||||||||||||||||| || ||| ||||||||| |     
T  23 acacgggcagaacagactgcaagctaacaactcagtttgggagaaactgtgtgagacgtggttgaagtgcaatgtggatgtcgtgtttcatgaccgtcaa 122  T
Q  157 catcttacatcttttgcatgttgtgttagagattcccagggacaatttattcgggctcaaacgaaatggtaacgtgcaaatacgactgttttagaggggg 256  Q
    ||| |   |||||| || |||||| ||||||| ||||  || ||||| ||||||||||||||||||||  |||| ||||||| ||| ||||  |||||||    
T  123 catatacnatctttcgcgtgttgttttagagactcccgtgggcaattcattcgggctcaaacgaaatgacaacgagcaaatatgacagtttgggaggggg 222  T
Q  257 aggtagtagccttactc 273  Q
    ||| ||| |||||||||    
T  223 aggcagttgccttactc 239  T

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