View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4043_high_1 (Length: 492)

Name: NF4043_high_1
Description: NF4043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4043_high_1
NF4043_high_1
[»] chr7 (23 HSPs)
chr7 (20-467)||(36222061-36222508)
chr7 (268-467)||(11279537-11279736)
chr7 (267-457)||(23759608-23759797)
chr7 (22-260)||(36218072-36218310)
chr7 (268-455)||(33313052-33313239)
chr7 (276-467)||(46846320-46846512)
chr7 (268-455)||(294921-295106)
chr7 (38-161)||(32727038-32727161)
chr7 (38-160)||(35938799-35938921)
chr7 (268-455)||(3861907-3862094)
chr7 (38-161)||(35976915-35977038)
chr7 (38-161)||(35998327-35998450)
chr7 (38-161)||(35957460-35957583)
chr7 (60-157)||(35981485-35981582)
chr7 (60-157)||(36002897-36002994)
chr7 (38-142)||(35946271-35946375)
chr7 (42-143)||(35951909-35952010)
chr7 (268-427)||(6967233-6967393)
chr7 (268-427)||(17866353-17866513)
chr7 (395-455)||(23108045-23108106)
chr7 (390-455)||(23313382-23313448)
chr7 (360-428)||(24783493-24783560)
chr7 (196-252)||(35957369-35957425)
[»] chr5 (12 HSPs)
chr5 (276-467)||(33575135-33575326)
chr5 (268-457)||(15532200-15532389)
chr5 (273-457)||(15542387-15542571)
chr5 (268-371)||(26711464-26711567)
chr5 (268-371)||(26981201-26981304)
chr5 (365-427)||(26712439-26712501)
chr5 (365-427)||(26982177-26982239)
chr5 (273-455)||(11988867-11989053)
chr5 (268-378)||(22159881-22159992)
chr5 (360-427)||(7650035-7650101)
chr5 (351-427)||(34405934-34406009)
chr5 (276-427)||(14616437-14616588)
[»] chr3 (4 HSPs)
chr3 (267-440)||(22626311-22626484)
chr3 (268-440)||(11138570-11138742)
chr3 (268-427)||(39563510-39563669)
chr3 (307-412)||(20536376-20536479)
[»] chr2 (6 HSPs)
chr2 (268-457)||(31528446-31528635)
chr2 (268-455)||(13710129-13710315)
chr2 (278-426)||(31626637-31626784)
chr2 (267-440)||(40018052-40018225)
chr2 (367-467)||(16294944-16295044)
chr2 (57-161)||(26329140-26329244)
[»] chr6 (10 HSPs)
chr6 (268-440)||(13017189-13017361)
chr6 (276-467)||(22221770-22221959)
chr6 (276-467)||(22247605-22247794)
chr6 (379-457)||(30978322-30978400)
chr6 (268-427)||(14790704-14790864)
chr6 (268-427)||(14795732-14795892)
chr6 (392-455)||(15535114-15535177)
chr6 (394-455)||(16883733-16883795)
chr6 (394-460)||(11183962-11184028)
chr6 (394-440)||(15540643-15540689)
[»] chr4 (4 HSPs)
chr4 (268-440)||(12172045-12172218)
chr4 (268-440)||(2541956-2542128)
chr4 (351-427)||(647288-647363)
chr4 (365-427)||(650574-650635)
[»] scaffold0440 (1 HSPs)
scaffold0440 (276-467)||(9909-10101)
[»] chr8 (3 HSPs)
chr8 (274-455)||(12575306-12575487)
chr8 (390-450)||(41778864-41778925)
chr8 (392-440)||(14418538-14418585)
[»] scaffold0264 (1 HSPs)
scaffold0264 (276-467)||(24193-24382)
[»] chr1 (10 HSPs)
chr1 (29-158)||(18117530-18117659)
chr1 (63-263)||(18125078-18125278)
chr1 (266-427)||(10765005-10765167)
chr1 (268-427)||(13493348-13493508)
chr1 (390-455)||(34066402-34066468)
chr1 (273-438)||(1936701-1936869)
chr1 (391-460)||(8435289-8435358)
chr1 (276-427)||(13496073-13496224)
chr1 (389-455)||(16190299-16190365)
chr1 (396-455)||(23990262-23990322)
[»] scaffold0363 (1 HSPs)
scaffold0363 (392-440)||(133-180)


Alignment Details
Target: chr7 (Bit Score: 416; Significance: 0; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 20 - 467
Target Start/End: Original strand, 36222061 - 36222508
Alignment:
Q  20 gatattcgtaagagaccatgagatttggaacttagaacaaaagaaaggtgatattttacctgcattaaaattaagctatgatgaaatgccatcctatttg 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36222061 gatattcgtaagagaccatgagatttggaacttagaacaaaagaaaggtgatattttacctgcattaaaattaagctatgatgaaatgccatcctatttg 36222160  T
Q  120 aggcattgttttgcttatttttccttgtatcccaaagattattcattttctattgttgaaattacttgtctgtggatagctcttggattggttcaatcct 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36222161 aggcattgttttgcttatttttccttgtatcccaaagattattcattttctattgttgaaattacttgtctgtggatagctcttggattggttcaatcct 36222260  T
Q  220 tgaatggaagtgaaaagctagagaatattgcaatagaatatattcgtgtgatggatatttggcaagtgaaccaaattcaatccaagtaataaaaattcgt 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||    
T  36222261 tgaatggaagtgaaaagctagagaatattgcaatagaatatattcgtgtgatggatatttggcaaatgaaccaaattcaattgaagtaataaaaattcgt 36222360  T
Q  320 ttctacgaggattgtatttaaattctacgtagcaattttattattaaaaaggatgtataaaatttatattggtgccctaggcagttgagttgattttgta 419  Q
    | | ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  36222361 taccacgaggattgtatttaatttctacgtagcaatttcattattaaaaaggatgtataaaatttatattggtgccctaggcagttgagttgattttcta 36222460  T
Q  420 acataaactgattaaaaacaaagaaagattggtttttagaagattgag 467  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  36222461 acataaactgattaaaaacaaagaaagattggtttttagaagattgag 36222508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 268 - 467
Target Start/End: Complemental strand, 11279736 - 11279537
Alignment:
Q  268 tgatggatatttggcaagtgaaccaaattcaatccaagtaataaaaattcgtttctacgaggattgtatttaaattctacgtagcaattttattattaaa 367  Q
    ||||| |||||||||||||||||||||||||||| |||||||||||||| ||||| || |||| | ||||||| |||||| ||||||||| |||||||||    
T  11279736 tgatgaatatttggcaagtgaaccaaattcaatcgaagtaataaaaatttgtttccacaaggactatatttaatttctacttagcaatttcattattaaa 11279637  T
Q  368 aaggatgtataaaatttatattggtgccctaggcagttgagttgattttgtaacataaactgattaaaaacaaagaaagattggtttttagaagattgag 467  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  11279636 aaggatgtataaaatttatattggtgccctaggcagttgagttgattttgtaacataaactgattaaaaacgaataaagattggtttttagaagattgag 11279537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 267 - 457
Target Start/End: Original strand, 23759608 - 23759797
Alignment:
Q  267 gtgatggatatttggcaagtgaaccaaattcaatccaagtaataaaaa-ttcgtttctacgaggattgtatttaaattctacgtagcaattttattatta 365  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||| |||||| |||||| || ||| |||    
T  23759608 gtgatagatatttggcaagtgaaccaaattcaatcgaagtaataaaaagttcgtttctacgaggactgtatttaacttctacttagcaaattcatt-tta 23759706  T
Q  366 aaaaggatgtataaaatttatattggtgccctaggcagttgagttgattttgtaacataaactgattaaaaacaaagaaagattggttttta 457  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  ||  |||||||||||    
T  23759707 aaaaggatgtataaa-tttatattggtgccctaggcagttgagttgatttagtaacataaactgattaaaaacaataaagaattggttttta 23759797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 22 - 260
Target Start/End: Original strand, 36218072 - 36218310
Alignment:
Q  22 tattcgtaagagaccatgagatttggaacttagaacaaaagaaaggtgatattttacctgcattaaaattaagctatgatgaaatgccatcctatttgag 121  Q
    |||| ||||||||||||||||| ||||| |||||||| ||||||| ||||||||||||||| |||||||||||||||||| |||||||||| ||| ||||    
T  36218072 tatttgtaagagaccatgagatatggaatttagaacagaagaaagatgatattttacctgctttaaaattaagctatgatcaaatgccatcatatctgag 36218171  T
Q  122 gcattgttttgcttatttttccttgtatcccaaagattattcattttctattgttgaaattacttgtctgtggatagctcttggattggttcaatccttg 221  Q
     || |||||||||| ||||||||||||||||||||| ||| | |||  ||| |||||||| |||  | |||||||| | |||||||| |||||| || |     
T  36218172 acaatgttttgcttgtttttccttgtatcccaaagactatacctttaatatcgttgaaatgactattttgtggataccccttggattagttcaacccata 36218271  T
Q  222 aatggaagtgaaaagctagagaatattgcaatagaatat 260  Q
    ||||||||||||||||||||| ||||||| | |||||||    
T  36218272 aatggaagtgaaaagctagagcatattgccagagaatat 36218310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 268 - 455
Target Start/End: Complemental strand, 33313239 - 33313052
Alignment:
Q  268 tgatggatatttggcaagtgaaccaaattcaatccaagtaataaaaattcgtttctacgaggattgtatttaaattctacgtagcaattttattattaaa 367  Q
    |||| ||||||||  ||||||| ||||||||||| |||||||||||||||||||||||||||| |||||| || |||||| ||||||||| |||||||||    
T  33313239 tgatagatatttgagaagtgaaacaaattcaatcgaagtaataaaaattcgtttctacgaggactgtatt-aacttctacttagcaatttcattattaaa 33313141  T
Q  368 aaggatgtataaaatttatattggtgccctaggcagttgagttgattttgtaacataaactg-attaaaaacaaagaaagattggtttt 455  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||  || ||||||||||    
T  33313140 aaggatgtgtaaaatttatattggtgccctaggcagttgagttgattttgtaacataaacggaattaaaaataataaaggattggtttt 33313052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 276 - 467
Target Start/End: Original strand, 46846320 - 46846512
Alignment:
Q  276 atttggcaagtgaaccaaattcaatccaagtaataaaaattcgtttctacgaggattgtatttaaattctacgtagcaattttattattaaaaaggatgt 375  Q
    |||||||||||||| || |||||||| |||||||||||||  ||||| ||||||| ||||||||| |||||| ||||||||| |||||||||||||||||    
T  46846320 atttggcaagtgaatcagattcaatcgaagtaataaaaatatgtttccacgaggactgtatttaatttctacttagcaatttcattattaaaaaggatgt 46846419  T
Q  376 ataaaatttatattggtgccctaggcagttgagttgattttgtaacataaactga-ttaaaaacaaagaaagattggtttttagaagattgag 467  Q
    ||||||||||||||||||||||||||||||||||||| ||  ||  ||||||||| | ||||||||  |||||||||||||||||| ||||||    
T  46846420 ataaaatttatattggtgccctaggcagttgagttgaattcttattataaactgactaaaaaacaataaaagattggtttttagaaaattgag 46846512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 268 - 455
Target Start/End: Complemental strand, 295106 - 294921
Alignment:
Q  268 tgatggatatttggcaagtgaaccaaattcaatccaagtaataaaaa-ttcgtttctacgaggattgtatttaaattctacgtagcaattttattattaa 366  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| || || || ||||||| ||||||||| |||||| ||||||||| ||||||||    
T  295106 tgatggatatttggcaagtgaaccaaattcaatcgaagtaataaaaaatttgtgtccacgaggactgtatttaacttctacttagcaatttcattattaa 295007  T
Q  367 aaaggatgtataaaatttatattggtgccctaggcagttgagttgattttgtaacataaactgattaaaaacaaagaaagattggtttt 455  Q
    ||||||||||  |||||||||||| ||||| |||||||  ||||| ||||||||||||| ||| |||||| |||| || ||||||||||    
T  295006 aaaggatgtaataaatttatattgatgcccgaggcagt--agttg-ttttgtaacataagctggttaaaagcaaataaggattggtttt 294921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 38 - 161
Target Start/End: Complemental strand, 32727161 - 32727038
Alignment:
Q  38 tgagatttggaacttagaacaaaagaaaggtgatattttacctgcattaaaattaagctatgatgaaatgccatcctatttgaggcattgttttgcttat 137  Q
    |||||| ||||| |||||||| ||||||| |||||||||||||||||| || |||||||||||| |||||||||||||||||||||| ||||||||||      
T  32727161 tgagatatggaatttagaacagaagaaagatgatattttacctgcattgaagttaagctatgatcaaatgccatcctatttgaggcaatgttttgctttc 32727062  T
Q  138 ttttccttgtatcccaaagattat 161  Q
    |||||| | |||||||||||||||    
T  32727061 ttttccctttatcccaaagattat 32727038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 38 - 160
Target Start/End: Complemental strand, 35938921 - 35938799
Alignment:
Q  38 tgagatttggaacttagaacaaaagaaaggtgatattttacctgcattaaaattaagctatgatgaaatgccatcctatttgaggcattgttttgcttat 137  Q
    |||||| ||||| |||||||| ||| ||  |||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||| ||||||||||||    
T  35938921 tgagatatggaatttagaacagaagcaaaatgatattttacctgcactaaaattaagctatgatcaaatgccatcctacttgaggcactgttttgcttat 35938822  T
Q  138 ttttccttgtatcccaaagatta 160  Q
    |||||| | ||||||||||||||    
T  35938821 ttttccctatatcccaaagatta 35938799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 268 - 455
Target Start/End: Original strand, 3861907 - 3862094
Alignment:
Q  268 tgatggatatttggcaagtgaaccaaattcaatccaagtaataaa-aattcgtttctacgaggattgtatttaaattctacgtagcaattttattattaa 366  Q
    |||| ||||||||||||||| || | | |||||| |||||||||| |||| || || |||||||||||  |||| |||||| ||||||||| ||||||||    
T  3861907 tgatagatatttggcaagtgtactagagtcaatcgaagtaataaataatttgtatccacgaggattgttattaacttctacttagcaatttcattattaa 3862006  T
Q  367 aaaggatgtataaaatttatattggtgccctaggcagttgagttgatttt--gtaacataaactgattaaaaacaaagaaagattggtttt 455  Q
    || |||||||| ||||| |   || |||||||||||||| | ||||||||  ||||||||||||||||||||||||  |||||||||||||    
T  3862007 aa-ggatgtattaaattcaa--tgatgccctaggcagttcaattgattttttgtaacataaactgattaaaaacaataaaagattggtttt 3862094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 38 - 161
Target Start/End: Complemental strand, 35977038 - 35976915
Alignment:
Q  38 tgagatttggaacttagaacaaaagaaaggtgatattttacctgcattaaaattaagctatgatgaaatgccatcctatttgaggcattgttttgcttat 137  Q
    |||||| ||||| |||||||||||||||| || ||||||||||||  ||||||||||||||||| |||||||||| ||| |||| || ||||||| ||||    
T  35977038 tgagatgtggaatttagaacaaaagaaagatggtattttacctgcgctaaaattaagctatgatcaaatgccatcatatatgagacaatgttttgtttat 35976939  T
Q  138 ttttccttgtatcccaaagattat 161  Q
     ||||| | |||||||||||||||    
T  35976938 atttccctttatcccaaagattat 35976915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 38 - 161
Target Start/End: Complemental strand, 35998450 - 35998327
Alignment:
Q  38 tgagatttggaacttagaacaaaagaaaggtgatattttacctgcattaaaattaagctatgatgaaatgccatcctatttgaggcattgttttgcttat 137  Q
    |||||| ||||| |||||||||||||||| || ||||||||||||  ||||||||||||||||| |||||||||| ||| |||| || ||||||| ||||    
T  35998450 tgagatgtggaatttagaacaaaagaaagatggtattttacctgcgctaaaattaagctatgatcaaatgccatcatatatgagacaatgttttgtttat 35998351  T
Q  138 ttttccttgtatcccaaagattat 161  Q
     ||||| | |||||||||||||||    
T  35998350 atttccctttatcccaaagattat 35998327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 38 - 161
Target Start/End: Complemental strand, 35957583 - 35957460
Alignment:
Q  38 tgagatttggaacttagaacaaaagaaaggtgatattttacctgcattaaaattaagctatgatgaaatgccatcctatttgaggcattgttttgcttat 137  Q
    |||||| ||||| |||||||||||||    |||||||||||||||  |||||||||| |||||| |||||||||| ||| |||| || ||||||||||||    
T  35957583 tgagatgtggaatttagaacaaaagattaatgatattttacctgcgctaaaattaagttatgatcaaatgccatcatatctgagacaatgttttgcttat 35957484  T
Q  138 ttttccttgtatcccaaagattat 161  Q
    |||||| | |||||||||||||||    
T  35957483 ttttccctttatcccaaagattat 35957460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 60 - 157
Target Start/End: Complemental strand, 35981582 - 35981485
Alignment:
Q  60 aagaaaggtgatattttacctgcattaaaattaagctatgatgaaatgccatcctatttgaggcattgttttgcttatttttccttgtatcccaaaga 157  Q
    ||||||| |||||||||||||||  | || ||||| |||||| |||||||||||||||||||||| ||||||||||| |||||| | |||||||||||    
T  35981582 aagaaagatgatattttacctgccctgaagttaagttatgatcaaatgccatcctatttgaggcagtgttttgcttacttttccctctatcccaaaga 35981485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 60 - 157
Target Start/End: Complemental strand, 36002994 - 36002897
Alignment:
Q  60 aagaaaggtgatattttacctgcattaaaattaagctatgatgaaatgccatcctatttgaggcattgttttgcttatttttccttgtatcccaaaga 157  Q
    ||||||| |||||||||||||||  | || ||||| |||||| |||||||||||||||||||||| ||||||||||| |||||| | |||||||||||    
T  36002994 aagaaagatgatattttacctgccctgaagttaagttatgatcaaatgccatcctatttgaggcagtgttttgcttacttttccctctatcccaaaga 36002897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 38 - 142
Target Start/End: Complemental strand, 35946375 - 35946271
Alignment:
Q  38 tgagatttggaacttagaacaaaagaaaggtgatattttacctgcattaaaattaagctatgatgaaatgccatcctatttgaggcattgttttgcttat 137  Q
    |||||| ||||| |||||||||||||||| |||||| ||||||||  |||||||||| |||||| |||||||||| ||| | || || ||||||||||||    
T  35946375 tgagatgtggaatttagaacaaaagaaagatgatatcttacctgcgctaaaattaagttatgatcaaatgccatcatatctaagacaatgttttgcttat 35946276  T
Q  138 ttttc 142  Q
    |||||    
T  35946275 ttttc 35946271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 42 - 143
Target Start/End: Complemental strand, 35952010 - 35951909
Alignment:
Q  42 atttggaacttagaacaaaagaaaggtgatattttacctgcattaaaattaagctatgatgaaatgccatcctatttgaggcattgttttgcttattttt 141  Q
    |||||||| ||||||||| |||||| |||||||||||||||  | ||||||||||||||| ||||| |||||||| | || |||||| |||| | |||||    
T  35952010 atttggaatttagaacaacagaaagatgatattttacctgccctgaaattaagctatgatcaaatgtcatcctatctaagacattgtattgcctcttttt 35951911  T
Q  142 cc 143  Q
    ||    
T  35951910 cc 35951909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 268 - 427
Target Start/End: Complemental strand, 6967393 - 6967233
Alignment:
Q  268 tgatggatatttggcaagtgaaccaaattcaatccaagtaataaaaa--ttcgtttctacgaggattgtatttaaattctacgtagcaattttattatta 365  Q
    |||| ||||||||||||||| ||||||  | ||| ||||| ||| ||  ||||| || |||||||  ||  |||| ||||||   |||||||  |||| |    
T  6967393 tgatagatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatccacgaggaccgttgttaatttctactcggcaatttctttatca 6967294  T
Q  366 aaaaggatgtataaaatttatattggt-gccctaggcagttgagttgattttgtaacataaac 427  Q
    ||||||||||||||| ||||||||| | ||||||||||||||||||| |||||||||||||||    
T  6967293 aaaaggatgtataaa-tttatattgattgccctaggcagttgagttg-ttttgtaacataaac 6967233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 268 - 427
Target Start/End: Original strand, 17866353 - 17866513
Alignment:
Q  268 tgatggatatttggcaagtgaaccaaattcaatccaagtaataaaaa--ttcgtttctacgaggattgtatttaaattctacgtagcaattttattatta 365  Q
    |||| ||||||||||||||| ||||||  | ||| ||||| ||| ||  ||||| || |||||||  ||  |||| ||||||   |||||||  |||| |    
T  17866353 tgatagatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatccacgaggaccgttgttaatttctactcggcaatttctttatca 17866452  T
Q  366 aaaaggatgtataaaatttatattg-gtgccctaggcagttgagttgattttgtaacataaac 427  Q
    |||||||||||| ||||||||||||  ||||||||||||||||| || |||||||||||||||    
T  17866453 aaaaggatgtat-aaatttatattgattgccctaggcagttgagctg-ttttgtaacataaac 17866513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 395 - 455
Target Start/End: Complemental strand, 23108106 - 23108045
Alignment:
Q  395 cctaggcagttgagttgat-tttgtaacataaactgattaaaaacaaagaaagattggtttt 455  Q
    ||||| ||||||||||||| ||||||||||||||  |||||||||||  |||||||||||||    
T  23108106 cctagacagttgagttgatgtttgtaacataaacgaattaaaaacaataaaagattggtttt 23108045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 390 - 455
Target Start/End: Original strand, 23313382 - 23313448
Alignment:
Q  390 ggtgccctaggcagttgagttgatttt-gtaacataaactgattaaaaacaaagaaagattggtttt 455  Q
    ||||||||||| |||||| |||||||| |||||||||||  |||||||||||  ||||| |||||||    
T  23313382 ggtgccctaggtagttgaattgatttttgtaacataaacgaattaaaaacaataaaagaatggtttt 23313448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 428
Target Start/End: Complemental strand, 24783560 - 24783493
Alignment:
Q  360 ttattaaaaaggatgtataaaatttatattg-gtgccctaggcagttgagttgattttgtaacataaact 428  Q
    |||| ||||||||||||| ||||||||||||  || || |||||||||||||| ||||||||||||||||    
T  24783560 ttatcaaaaaggatgtat-aaatttatattgattgtccaaggcagttgagttg-ttttgtaacataaact 24783493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 196 - 252
Target Start/End: Complemental strand, 35957425 - 35957369
Alignment:
Q  196 tagctcttggattggttcaatccttgaatggaagtgaaaagctagagaatattgcaa 252  Q
    |||| |||||||| ||||||||| | ||||||||||||||||| || | ||||||||    
T  35957425 tagcccttggattagttcaatccctaaatggaagtgaaaagctggaaagtattgcaa 35957369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 125; Significance: 4e-64; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 276 - 467
Target Start/End: Complemental strand, 33575326 - 33575135
Alignment:
Q  276 atttggcaagtgaaccaaattcaatccaagtaataaaaa-ttcgtttctacgaggattgtatttaaattctacgtagcaattttattattaaaaaggatg 374  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||  ||||||| ||||||||| |||||  ||||||||||||||||||||||||||    
T  33575326 atttggcaagtgaaccaaattcaatcgaagtaataaaaaattcgttttcacgaggactgtatttaacttctatttagcaattttattattaaaaaggatg 33575227  T
Q  375 tataaaatttatattggtgccctaggcagttgagttgattttgtaacataaactgattaaaaacaaagaaagattggtttttagaagattgag 467  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  ||  |||||||||||||| ||||||    
T  33575226 tataaa-tttatattggtgccctaggcagttgagttgatttagtaacataaactgattaaaaacaataaagaattggtttttagaaaattgag 33575135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 268 - 457
Target Start/End: Original strand, 15532200 - 15532389
Alignment:
Q  268 tgatggatatttggcaagtgaaccaaattcaatccaagtaataaaaa-ttcgtttctacgaggattgtatttaaattctacgtagcaattttattattaa 366  Q
    |||| ||||||||||| ||||||||||||| ||| |||||||||||| |||||||| ||||||| ||||||||| |||||| ||||||||| ||||||||    
T  15532200 tgatagatatttggcatgtgaaccaaattcgatcgaagtaataaaaaattcgtttccacgaggactgtatttaacttctacttagcaatttcattattaa 15532299  T
Q  367 aaaggatgtataaaatttatattggtgccctaggcagttgagttgattttgtaacataaactgattaaaaacaaagaaagattggttttta 457  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  ||  |||||||||||    
T  15532300 aaaggatgtataaa-tttatattggtgccctaggcagttgagttgatttagtaacataaactgattaaaaacaataaagaattggttttta 15532389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 273 - 457
Target Start/End: Original strand, 15542387 - 15542571
Alignment:
Q  273 gatatttggcaagtgaaccaaattcaatccaagtaataaaaa-ttcgtttctacgaggattgtatttaaattctacgtagcaattttattattaaaaagg 371  Q
    ||||||||||||||||||||||||| ||| |||||||||||| |||||||| ||||||| ||||||||| |||||| || |||||| |||||||||||||    
T  15542387 gatatttggcaagtgaaccaaattcgatcgaagtaataaaaaattcgtttccacgaggactgtatttaacttctacttaacaatttcattattaaaaagg 15542486  T
Q  372 atgtataaaatttatattggtgccctaggcagttgagttgattttgtaacataaactgattaaaaacaaagaaagattggttttta 457  Q
    ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  ||  |||||||||||    
T  15542487 atgtataaa-tttatattggtgccctaggcagttgagttgatttagtaacataaactgattaaaaacaataaagaattggttttta 15542571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 268 - 371
Target Start/End: Original strand, 26711464 - 26711567
Alignment:
Q  268 tgatggatatttggcaagtgaaccaaattcaatccaagtaat-aaaaattcgtttctacgaggattgtatttaaattctacgtagcaattttattattaa 366  Q
    |||| ||||||||||||||||||||||||||||  ||||||| ||||||||||||| ||||||| |||| |||| |||||| ||||||||| ||||| ||    
T  26711464 tgatagatatttggcaagtgaaccaaattcaattgaagtaataaaaaattcgtttccacgaggactgta-ttaacttctacttagcaatttcattatcaa 26711562  T
Q  367 aaagg 371  Q
    |||||    
T  26711563 aaagg 26711567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 268 - 371
Target Start/End: Original strand, 26981201 - 26981304
Alignment:
Q  268 tgatggatatttggcaagtgaaccaaattcaatccaagtaat-aaaaattcgtttctacgaggattgtatttaaattctacgtagcaattttattattaa 366  Q
    |||| ||||||||||||||||||||||||||||  ||||||| ||||||||||||| ||||||| |||| |||| |||||| ||||||||| ||||| ||    
T  26981201 tgatagatatttggcaagtgaaccaaattcaattgaagtaataaaaaattcgtttccacgaggactgta-ttaacttctacttagcaatttcattatcaa 26981299  T
Q  367 aaagg 371  Q
    |||||    
T  26981300 aaagg 26981304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 365 - 427
Target Start/End: Original strand, 26712439 - 26712501
Alignment:
Q  365 aaaaaggatgtataaaatttatattggtgccctaggcagttgagttgattttgtaacataaac 427  Q
    ||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  26712439 aaaaaggatgtgtaaaatttatattagtgccctagacagttgagttgattttgtaacataaac 26712501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 365 - 427
Target Start/End: Original strand, 26982177 - 26982239
Alignment:
Q  365 aaaaaggatgtataaaatttatattggtgccctaggcagttgagttgattttgtaacataaac 427  Q
    ||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  26982177 aaaaaggatgtgtaaaatttatattagtgccctagacagttgagttgattttgtaacataaac 26982239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 273 - 455
Target Start/End: Original strand, 11988867 - 11989053
Alignment:
Q  273 gatatttggcaagtgaaccaaattcaatccaagtaataaa-aattcgtttctacgaggattgtatttaaattcta--cgtagcaattttattattaaaaa 369  Q
    |||||||| |||||||| ||||||||||| |||||||||| |||||||||| ||||| |  ||  |||| |||||  | ||||||||| |||| ||| ||    
T  11988867 gatatttgacaagtgaatcaaattcaatcgaagtaataaataattcgtttccacgagaaccgttcttaacttctatacttagcaatttcattagtaataa 11988966  T
Q  370 ggatgtataaaatttatattggtgccctaggcagttgagttga-ttttgtaacataaactgattaaaaacaaagaaagattggtttt 455  Q
    ||| |||||  |  |  | |||| ||||||||||||||||||| ||||||||||||||| |||||||||| |  |||||||| ||||    
T  11988967 ggacgtatattaaattcaatggtcccctaggcagttgagttgatttttgtaacataaacagattaaaaacgataaaagattgatttt 11989053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 268 - 378
Target Start/End: Complemental strand, 22159992 - 22159881
Alignment:
Q  268 tgatggatatttggcaagtgaaccaaattcaatccaagtaataaaaa-ttcgtttctacgaggattgtatttaaattctacgtagcaattttattattaa 366  Q
    |||| |||||||| |||||| ||||||||| ||| |||||||||||| || ||||| ||||||| ||||||||| |||||| |||||||||  || | ||    
T  22159992 tgatagatatttgacaagtgtaccaaattcgatcgaagtaataaaaaatttgtttccacgaggactgtatttaacttctacttagcaatttctttgtcaa 22159893  T
Q  367 aaaggatgtata 378  Q
    ||||||||||||    
T  22159892 aaaggatgtata 22159881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 360 - 427
Target Start/End: Original strand, 7650035 - 7650101
Alignment:
Q  360 ttattaaaaaggatgtataaaatttatattggt-gccctaggcagttgagttgattttgtaacataaac 427  Q
    |||| |||||||||||||||| ||||||||| | ||||||||||||||||||| |||||||||||||||    
T  7650035 ttatcaaaaaggatgtataaa-tttatattgattgccctaggcagttgagttg-ttttgtaacataaac 7650101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 351 - 427
Target Start/End: Complemental strand, 34406009 - 34405934
Alignment:
Q  351 gcaattttattattaaaaaggatgtataaaatttatattggt-gccctaggcagttgagttgattttgtaacataaac 427  Q
    |||||||  |||| |||||||||||||||| ||||||||| | ||||||||||||||||||| || ||||||||||||    
T  34406009 gcaatttctttatcaaaaaggatgtataaa-tttatattgattgccctaggcagttgagttg-ttgtgtaacataaac 34405934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 427
Target Start/End: Original strand, 14616437 - 14616588
Alignment:
Q  276 atttggcaagtgaaccaaattcaatccaagtaataa--aaattcgtttctacgaggattgtatttaaattctacgtagcaattttattattaaaaaggat 373  Q
    |||||||||||||||||||  | ||| |||||||||  |||||||| || |||||||  ||  |||| ||||||   |||||||  |||| |||||||||    
T  14616437 atttggcaagtgaaccaaa-actatcgaagtaataaataaattcgtatccacgaggaccgttgttaatttctactcggcaatttctttatcaaaaaggat 14616535  T
Q  374 gtataaaatttatattg-gtgccctaggcagttgagttgattttgtaacataaac 427  Q
    ||||  |||||||||||  | ||||||| |||||||||| |||||||||||||||    
T  14616536 gtat-gaatttatattgattaccctaggaagttgagttg-ttttgtaacataaac 14616588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 123; Significance: 6e-63; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 267 - 440
Target Start/End: Original strand, 22626311 - 22626484
Alignment:
Q  267 gtgatggatatttggcaagtgaaccaaattcaatccaagtaataaaaa-ttcgtttctacgaggattgtatttaaattctacgtagcaattttattatta 365  Q
    ||||| ||||||||||||||||||||||||| ||| |||||||||||| |||||||| ||||||| ||||||||| |||||| ||||||||| |||||||    
T  22626311 gtgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaaagttcgtttccacgaggactgtatttaacttctacttagcaatttcattatta 22626410  T
Q  366 aaaaggatgtataaaatttatattggtgccctaggcagttgagttgattttgtaacataaactgattaaaaacaa 440  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  22626411 aaaaggatgtataaa-tttatattggtgccctaggcagttgagttgatttagtaacataaactgattaaaaacaa 22626484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 268 - 440
Target Start/End: Original strand, 11138570 - 11138742
Alignment:
Q  268 tgatggatatttggcaagtgaaccaaattcaatccaagtaataaaaa-ttcgtttctacgaggattgtatttaaattctacgtagcaattttattattaa 366  Q
    |||| ||||||||||||||||||||||||| ||| |||||||||||| |||||||| ||||||| ||||||||| |||||| ||||||||| ||||||||    
T  11138570 tgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaaagttcgtttccacgaggactgtatttaacttctacttagcaatttcattattaa 11138669  T
Q  367 aaaggatgtataaaatttatattggtgccctaggcagttgagttgattttgtaacataaactgattaaaaacaa 440  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  11138670 aaaggatgtataaa-tttatattggtgccctaggcagttgagttgatttagtaacataaactgattaaaaacaa 11138742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 268 - 427
Target Start/End: Original strand, 39563510 - 39563669
Alignment:
Q  268 tgatggatatttggcaagtgaaccaaattcaatccaagtaataaaaa-ttcgtttctacgaggattgtatttaaattctacgtagcaattttattattaa 366  Q
    |||| ||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||| |||||| || |||||| ||||||||| ||||| ||    
T  39563510 tgatagatatttggcaagtgaaccaaattcaatcaaagtaataaaaaattcgtttccacgaggactgtatt-aacttctacttagcaatttcattataaa 39563608  T
Q  367 aaaggatgtataaaatttatattggtgccctaggcagttgagttgattttgtaacataaac 427  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  39563609 aaaggatgtgtaaaatttatattagtgccctaggcagttgagttgattttgtaacataaac 39563669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 307 - 412
Target Start/End: Original strand, 20536376 - 20536479
Alignment:
Q  307 aataaaaattcgtttctacgaggattgtatttaaattctacgtagcaattttattattaaaaaggatgtataaaatttatattggtgccctaggcagttg 406  Q
    |||||||  |||| || ||||||| ||||||||| |||||| ||| ||||| ||||||||||||||||||  |||||   |  |||||||||||||||||    
T  20536376 aataaaagatcgtatccacgaggactgtatttaacttctacttagaaatttcattattaaaaaggatgtagtaaatt--caagggtgccctaggcagttg 20536473  T
Q  407 agttga 412  Q
     |||||    
T  20536474 ggttga 20536479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 119; Significance: 1e-60; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 268 - 457
Target Start/End: Complemental strand, 31528635 - 31528446
Alignment:
Q  268 tgatggatatttggcaagtgaaccaaattcaatccaagtaataaaaa-ttcgtttctacgaggattgtatttaaattctacgtagcaattttattattaa 366  Q
    |||| ||||||||||||||||||||||||| ||| |||||||||||| || ||||| ||||||| ||||||||| |||||| ||||||||| ||||||||    
T  31528635 tgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaaaatttgtttccacgaggactgtatttaacttctacttagcaatttcattattaa 31528536  T
Q  367 aaaggatgtataaaatttatattggtgccctaggcagttgagttgattttgtaacataaactgattaaaaacaaagaaagattggttttta 457  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  ||  |||||||||||    
T  31528535 aaaggatgtataaa-tttatattggtgccctaggcagttgagttgatttagtaacataaactgattaaaaacaataaagaattggttttta 31528446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 268 - 455
Target Start/End: Complemental strand, 13710315 - 13710129
Alignment:
Q  268 tgatggatatttggcaagtgaaccaaattcaatccaagtaataaaaattcgtttctacgaggattgtatttaaattctacgtagcaattttattattaaa 367  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| | ||||||||| |||||| ||||||||| |||||||||    
T  13710315 tgatagatatttggcaagtgaaccaaattcaatcgaagtaataaaaattcgtttttacgagaactgtatttaacttctacttagcaatttcattattaaa 13710216  T
Q  368 aaggatgtataaaatttatattggtgccctaggcagttgagttgattttgtaacataaactgattaaaaacaaagaaagattggtttt 455  Q
    ||||||||||||||||||||||| ||||  ||| |||||||||||  ||||||||||||| ||||||||||||  |||||||||||||    
T  13710215 aaggatgtataaaatttatattgatgcctgaggaagttgagttga-gttgtaacataaacggattaaaaacaataaaagattggtttt 13710129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 278 - 426
Target Start/End: Complemental strand, 31626784 - 31626637
Alignment:
Q  278 ttggcaagtgaaccaaattcaatccaagtaataaaaattcgtttctacgaggattgtatttaaattctacgtagcaattttattattaaaaaggatgtat 377  Q
    |||| ||||||||||||||||||| |||||||||||||||||||| | ||||| |||||| || |||||| ||||||||| ||||||||||||||||| |    
T  31626784 ttggtaagtgaaccaaattcaatcgaagtaataaaaattcgtttcaatgaggactgtatt-aacttctacttagcaatttcattattaaaaaggatgtgt 31626686  T
Q  378 aaaatttatattggtgccctaggcagttgagttgattttgtaacataaa 426  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  31626685 aaaatttatattggtgccctaggcagttgagttgattttgtaacataaa 31626637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 267 - 440
Target Start/End: Complemental strand, 40018225 - 40018052
Alignment:
Q  267 gtgatggatatttggcaagtgaaccaaattcaatccaagtaataaaaa-ttcgtttctacgaggattgtatttaaattctacgtagcaattttattatta 365  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||| || ||||  || |||| || |||||| ||| || | |||||||| ||||||    
T  40018225 gtgatgaatatttggcaagtgaaccaaattcaatcgaagtaataaaaaatttgttttcacaaggagtgcatttaacttcgacttggcaatttttttatta 40018126  T
Q  366 aaaaggatgtataaaatttatattggtgccctaggcagttgagttgattttgtaacataaactgattaaaaacaa 440  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  40018125 aaaaggatgtataaaatttatattgatgccctaggcagttgagttga-tttgtaacataaacggattaaaaacaa 40018052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 367 - 467
Target Start/End: Complemental strand, 16295044 - 16294944
Alignment:
Q  367 aaaggatgtataaaatttatattggtgccctaggcagttgagttgattttgtaacataaactgattaaaaacaaagaaagattggtttttagaagattga 466  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||| ||||| |||| |||||    
T  16295044 aaaggatgtataaaatttatattgatgccctaggcagttgagttgattttgtatcataaaccgattaaaaacaaataaagattagttttcagaaaattga 16294945  T
Q  467 g 467  Q
    |    
T  16294944 g 16294944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 57 - 161
Target Start/End: Original strand, 26329140 - 26329244
Alignment:
Q  57 caaaagaaaggtgatattttacctgcattaaaattaagctatgatgaaatgccatcctatttgaggcattgttttgcttatttttccttgtatcccaaag 156  Q
    ||||| |||| ||||||||||||||   | || |||||||||||| ||||||||||||||||||| ||||||||||||||||||||| | | ||||||||    
T  26329140 caaaacaaagatgatattttacctgtgcttaagttaagctatgatcaaatgccatcctatttgagacattgttttgcttatttttccctttttcccaaag 26329239  T
Q  157 attat 161  Q
    |||||    
T  26329240 attat 26329244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 118; Significance: 5e-60; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 268 - 440
Target Start/End: Original strand, 13017189 - 13017361
Alignment:
Q  268 tgatggatatttggcaagtgaaccaaattcaatccaagtaataaaaa-ttcgtttctacgaggattgtatttaaattctacgtagcaattttattattaa 366  Q
    |||| ||||||||||||||||||||||||| ||| |||||||||||| |||||||| ||||||| | ||||||| |||||| ||||||||| ||||||||    
T  13017189 tgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaaagttcgtttccacgaggactatatttaacttctacttagcaatttcattattaa 13017288  T
Q  367 aaaggatgtataaaatttatattggtgccctaggcagttgagttgattttgtaacataaactgattaaaaacaa 440  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  13017289 aaaggatgtataaa-tttatattggtgccctaggcagttgagttgatttagtaacataaactgattaaaaacaa 13017361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 276 - 467
Target Start/End: Complemental strand, 22221959 - 22221770
Alignment:
Q  276 atttggcaagtgaaccaaattcaatccaagtaataa-aaattcgtttctacgaggattgtatttaaattctacgtagcaattttattattaaaaaggatg 374  Q
    |||||||||||| ||||||  | ||| ||||| ||| ||||||||||| ||||||| | ||||||  ||||||  |||||||| ||||||||||||||||    
T  22221959 atttggcaagtgtaccaaaagctatcgaagtagtaataaattcgtttccacgaggactatatttagcttctactaagcaatttcattattaaaaaggatg 22221860  T
Q  375 tataaaatttatattggtgccctaggcagttgagttgattttgtaacataaactgattaaaaacaaagaaagattggtttttagaagattgag 467  Q
    ||| |||||  |||||||||||||||||||||||||||||| |||  ||||||| |||||||||||  ||  |||||||||||||| ||||||    
T  22221859 tat-aaattattattggtgccctaggcagttgagttgatttagta--ataaactaattaaaaacaataaagaattggtttttagaaaattgag 22221770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 276 - 467
Target Start/End: Complemental strand, 22247794 - 22247605
Alignment:
Q  276 atttggcaagtgaaccaaattcaatccaagtaataa-aaattcgtttctacgaggattgtatttaaattctacgtagcaattttattattaaaaaggatg 374  Q
    |||||||||||| ||||||  | ||| ||||| ||| ||||||||||| ||||||| | ||||||  ||||||  |||||||| ||||||||||||||||    
T  22247794 atttggcaagtgtaccaaaagctatcgaagtagtaataaattcgtttccacgaggactatatttagcttctactaagcaatttcattattaaaaaggatg 22247695  T
Q  375 tataaaatttatattggtgccctaggcagttgagttgattttgtaacataaactgattaaaaacaaagaaagattggtttttagaagattgag 467  Q
    ||| |||||  |||||||||||||||||||||||||||||| |||  ||||||| |||||||||||  ||  |||||||||||||| ||||||    
T  22247694 tat-aaattattattggtgccctaggcagttgagttgatttagta--ataaactaattaaaaacaataaagaattggtttttagaaaattgag 22247605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 379 - 457
Target Start/End: Original strand, 30978322 - 30978400
Alignment:
Q  379 aaatttatattggtgccctaggcagttgagttgattttgtaacataaactgattaaaaacaaagaaagattggttttta 457  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  ||  |||||||||||    
T  30978322 aaatttatattggtgccctaggcagttgagttgatttagtaacataaactgattaaaaacaataaagaattggttttta 30978400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 268 - 427
Target Start/End: Complemental strand, 14790864 - 14790704
Alignment:
Q  268 tgatggatatttggcaagtgaaccaaattcaatccaagtaataaaaa--ttcgtttctacgaggattgtatttaaattctacgtagcaattttattatta 365  Q
    |||| ||||||||||||||| ||||||  | ||| ||||| ||| ||  ||||| || |||||||  ||  |||| ||||||   |||||||  |||| |    
T  14790864 tgatagatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatccacgaggaccgttgttaatttctactcggcaatttctttatca 14790765  T
Q  366 aaaaggatgtataaaatttatattggt-gccctaggcagttgagttgattttgtaacataaac 427  Q
    ||||||||||||||| ||||||||| | ||||||||||||||||||| |||||||||||||||    
T  14790764 aaaaggatgtataaa-tttatattgattgccctaggcagttgagttg-ttttgtaacataaac 14790704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 268 - 427
Target Start/End: Complemental strand, 14795892 - 14795732
Alignment:
Q  268 tgatggatatttggcaagtgaaccaaattcaatccaagtaataaaaa--ttcgtttctacgaggattgtatttaaattctacgtagcaattttattatta 365  Q
    |||| ||||||||||||||| ||||||  | ||| ||||| ||| ||  |||||  |||||||||  ||  |||| ||||||   |||||||  |||| |    
T  14795892 tgatagatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtacctacgaggaccgttgttaatttctactcggcaatttctttatca 14795793  T
Q  366 aaaaggatgtataaaatttatattggt-gccctaggcagttgagttgattttgtaacataaac 427  Q
    ||||||||||||||| ||||||||| | ||||||||||||||||||| |||||||||||||||    
T  14795792 aaaaggatgtataaa-tttatattgattgccctaggcagttgagttg-ttttgtaacataaac 14795732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 392 - 455
Target Start/End: Complemental strand, 15535177 - 15535114
Alignment:
Q  392 tgccctaggcagttgagttgattttgtaacataaactgattaaaaacaaagaaagattggtttt 455  Q
    ||||||||||||||||||||||||||||| | |||  ||||||||||||  |||| ||||||||    
T  15535177 tgccctaggcagttgagttgattttgtaaaacaaatagattaaaaacaataaaagtttggtttt 15535114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 394 - 455
Target Start/End: Complemental strand, 16883795 - 16883733
Alignment:
Q  394 ccctaggcagttgagttgatttt-gtaacataaactgattaaaaacaaagaaagattggtttt 455  Q
    |||||||||||||| |||||||| |||||||||||  |||||||||||  |||||||||||||    
T  16883795 ccctaggcagttgaattgatttttgtaacataaacgaattaaaaacaataaaagattggtttt 16883733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 394 - 460
Target Start/End: Original strand, 11183962 - 11184028
Alignment:
Q  394 ccctaggcagttgagttga-ttttgtaacataaactgattaaaaacaaagaaagattggtttttagaa 460  Q
    ||||||||||||||||||| |||||||||||||||  | |||||||||  |||| |||||||||||||    
T  11183962 ccctaggcagttgagttgatttttgtaacataaacgtaataaaaacaataaaag-ttggtttttagaa 11184028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 394 - 440
Target Start/End: Complemental strand, 15540689 - 15540643
Alignment:
Q  394 ccctaggcagttgagttgattttgtaacataaactgattaaaaacaa 440  Q
    ||||||||||||||||||||||| ||| |||||  ||||||||||||    
T  15540689 ccctaggcagttgagttgattttctaaaataaagggattaaaaacaa 15540643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 116; Significance: 8e-59; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 268 - 440
Target Start/End: Complemental strand, 12172218 - 12172045
Alignment:
Q  268 tgatggatatttggcaagtgaaccaaattcaatccaagtaataaaaat--tcgtttctacgaggattgtatttaaattctacgtagcaattttattatta 365  Q
    |||| ||||||||||||||||||||||||| ||| ||||||||||||   ||||||| ||||||| ||||||||| |||||| ||||||||| |||||||    
T  12172218 tgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaaaagatcgtttccacgaggactgtatttaacttctacttagcaatttcattatta 12172119  T
Q  366 aaaaggatgtataaaatttatattggtgccctaggcagttgagttgattttgtaacataaactgattaaaaacaa 440  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  12172118 aaaaggatgtataaa-tttatattggtgccctaggcagttgagttgatttagtaacataaactgattaaaaacaa 12172045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 268 - 440
Target Start/End: Complemental strand, 2542128 - 2541956
Alignment:
Q  268 tgatggatatttggcaagtgaaccaaattcaatccaagtaataaa-aattcgtttctacgaggattgtatttaaattctacgtagcaattttattattaa 366  Q
    |||| ||||||||||||||| |||||| |||||| |||||||||| ||||||| || ||||||| ||||||||| ||||||  |||||||| ||||||||    
T  2542128 tgatagatatttggcaagtgtaccaaagtcaatcgaagtaataaataattcgtatccacgaggactgtatttaacttctactgagcaatttcattattaa 2542029  T
Q  367 aaaggatgtataaaatttatattggtgccctaggcagttgagttgatt-ttgtaacataaactgattaaaaacaa 440  Q
    ||||||||||| |||||   | |||||||||||||||||||||| ||| ||||||||||||| ||||||||||||    
T  2542028 aaaggatgtattaaatt--caatggtgccctaggcagttgagtttattcttgtaacataaacggattaaaaacaa 2541956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 351 - 427
Target Start/End: Original strand, 647288 - 647363
Alignment:
Q  351 gcaattttattattaaaaaggatgtataaaatttatattg-gtgccctaggcagttgagttgattttgtaacataaac 427  Q
    |||||||  |||| ||||||||||||| ||||||||||||  ||||||||||| |||||||| |||||||||||||||    
T  647288 gcaatttctttatcaaaaaggatgtat-aaatttatattgattgccctaggcatttgagttg-ttttgtaacataaac 647363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 427
Target Start/End: Original strand, 650574 - 650635
Alignment:
Q  365 aaaaaggatgtataaaatttatattg-gtgccctaggcagttgagttgattttgtaacataaac 427  Q
    ||||||||||||| ||||||||||||  ||||||||||| |||||||| |||||||||||||||    
T  650574 aaaaaggatgtat-aaatttatattgattgccctaggcatttgagttg-ttttgtaacataaac 650635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440 (Bit Score: 103; Significance: 5e-51; HSPs: 1)
Name: scaffold0440
Description:

Target: scaffold0440; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 276 - 467
Target Start/End: Complemental strand, 10101 - 9909
Alignment:
Q  276 atttggcaagtgaaccaaattcaatccaagtaataaaa--attcgtttctacgaggattgtatttaaattctacgtagcaattttattattaaaaaggat 373  Q
    |||||||||||||| ||||||| ||| |||||||||||  |||||||||  |  ||| ||||||||| |||||| ||||||||| |||||||||||||||    
T  10101 atttggcaagtgaatcaaattcgatcgaagtaataaaagaattcgtttcctcagggactgtatttaacttctacttagcaatttcattattaaaaaggat 10002  T
Q  374 gtataaaatttatattggtgccctaggcagttgagttgattttgtaacataaactgattaaaaacaaagaaagattggtttttagaagattgag 467  Q
    ||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||  ||  |||||||||||||| ||||||    
T  10001 gtataaa-tttatattggtcccctaggcagttgagttgatttagtaacataaactgattaaaaacaataaataattggtttttagaaaattgag 9909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 6e-38; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 274 - 455
Target Start/End: Original strand, 12575306 - 12575487
Alignment:
Q  274 atatttggcaagtgaaccaaattcaatccaagtaataaa-aattcgtttctacgaggattgtatttaaattctacgtagcaattttattattaaaaagga 372  Q
    |||||||||||||| ||||||||||||| |||||||||| ||||||| || ||||||| |||  |||| ||||||  | ||| || ||||||||||||||    
T  12575306 atatttggcaagtgtaccaaattcaatcgaagtaataaataattcgtatccacgaggactgttgttaacttctactcaacaagttcattattaaaaagga 12575405  T
Q  373 tgtataaaatttatattggtgccctaggcagttgagttga-ttttgtaacataaactgattaaaaacaaagaaagattggtttt 455  Q
    ||||| |||||   | |||||||||||||||||||||||| |||||||||||||| |||||||||||||  |||||||||||||    
T  12575406 tgtattaaatt--caatggtgccctaggcagttgagttgatttttgtaacataaattgattaaaaacaataaaagattggtttt 12575487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 390 - 450
Target Start/End: Original strand, 41778864 - 41778925
Alignment:
Q  390 ggtgccctaggcagttgagttga-ttttgtaacataaactgattaaaaacaaagaaagattg 450  Q
    |||||||||||||||||| |||| |||||||||||||||  |||||||||||  ||||||||    
T  41778864 ggtgccctaggcagttgaattgatttttgtaacataaacgaattaaaaacaataaaagattg 41778925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 392 - 440
Target Start/End: Complemental strand, 14418585 - 14418538
Alignment:
Q  392 tgccctaggcagttgagttgattttgtaacataaactgattaaaaacaa 440  Q
    |||||||||||||||||||| |||| ||||||||||  |||||||||||    
T  14418585 tgccctaggcagttgagttggtttt-taacataaacaaattaaaaacaa 14418538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 276 - 467
Target Start/End: Original strand, 24193 - 24382
Alignment:
Q  276 atttggcaagtgaaccaaattcaatccaagtaataa-aaattcgtttctacgaggattgtatttaaattctacgtagcaattttattattaaaaaggatg 374  Q
    |||||||||||| ||||||  | ||| ||||| ||| ||||| ||||| ||||||| ||||||||| ||||||  | |||||| ||||||||||||||||    
T  24193 atttggcaagtgtaccaaaagctatcgaagtagtaataaatttgtttccacgaggactgtatttaacttctactcaacaatttcattattaaaaaggatg 24292  T
Q  375 tataaaatttatattggtgccctaggcagttgagttgattttgtaacataaactgattaaaaacaaagaaagattggtttttagaagattgag 467  Q
    ||| |||||  |||||||||||||||||||||||||||||| |||  |||||||||||||||||||  ||  |||||||||||||| ||||||    
T  24293 tat-aaattattattggtgccctaggcagttgagttgatttagta--ataaactgattaaaaacaataaagaattggtttttagaaaattgag 24382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 29 - 158
Target Start/End: Complemental strand, 18117659 - 18117530
Alignment:
Q  29 aagagaccatgagatttggaacttagaacaaaagaaaggtgatattttacctgcattaaaattaagctatgatgaaatgccatcctatttgaggcattgt 128  Q
    |||||||  |||||| ||||  |||||||||||| ||  |||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||| ||     
T  18117659 aagagactctgagatgtggactttagaacaaaagcaaaatgatattttacctgcactaaaattaagctatgataaaatgccatcctatttaaggcactgc 18117560  T
Q  129 tttgcttatttttccttgtatcccaaagat 158  Q
    ||||||||  || |  ||||||||||||||    
T  18117559 tttgcttacattgctatgtatcccaaagat 18117530  T

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Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 63 - 263
Target Start/End: Complemental strand, 18125278 - 18125078
Alignment:
Q  63 aaaggtgatattttacctgcattaaaattaagctatgatgaaatgccatcctatttgaggcattgttttgcttatttttccttgtatcccaaagattatt 162  Q
    |||| |||||||||||||||| ||||||| ||||||||  |||||||||||||||| ||||| || ||||||||||| ||| | ||||| ||||||  |     
T  18125278 aaagatgatattttacctgcactaaaattgagctatgaccaaatgccatcctatttaaggcaatgctttgcttatttctccctttatcctaaagatatta 18125179  T
Q  163 cattttctattgttgaaattacttgtctgtggatagctcttggattggttcaatccttgaatggaagtgaaaagctagagaatattgcaatagaatatat 262  Q
    | || | || | | || |||| |  ||| ||| |||| |||||||| |||||| ||  ||| ||||||||||| |||||| ||||||||| |||||||||    
T  18125178 ctttctgtagtttggatattattgctctttgggtagcccttggattagttcaaccccggaacggaagtgaaaaactagaggatattgcaagagaatatat 18125079  T
Q  263 t 263  Q
    |    
T  18125078 t 18125078  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 266 - 427
Target Start/End: Complemental strand, 10765167 - 10765005
Alignment:
Q  266 tgtgatggatatttggcaagtgaaccaaattcaatccaagtaataaaaa--ttcgtttctacgaggattgtatttaaattctacgtagcaattttattat 363  Q
    |||||| ||||||||||||||| ||||||  | ||| ||||| ||| ||  ||||| || |||||||  ||  |||| ||||||   |||||||  ||||    
T  10765167 tgtgatagatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatccacgaggaccgttgttaatttctactcggcaatttctttat 10765068  T
Q  364 taaaaaggatgtataaaatttatattggt-gccctaggcagttgagttgattttgtaacataaac 427  Q
     |||||||||||||||| ||||||||| | ||||||||||||||||||| |||||||||||||||    
T  10765067 caaaaaggatgtataaa-tttatattgattgccctaggcagttgagttg-ttttgtaacataaac 10765005  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 268 - 427
Target Start/End: Complemental strand, 13493508 - 13493348
Alignment:
Q  268 tgatggatatttggcaagtgaaccaaattcaatccaagtaataaaaa--ttcgtttctacgaggattgtatttaaattctacgtagcaattttattatta 365  Q
    |||| ||||||||||||||| ||||||  | ||| ||||| ||| ||  ||||| || |||||||  ||  |||| ||||||   |||||||  |||| |    
T  13493508 tgatagatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatccacgaggaccgttgttaatttctactcggcaatttctttatca 13493409  T
Q  366 aaaaggatgtataaaatttatattggt-gccctaggcagttgagttgattttgtaacataaac 427  Q
    ||||||||||||||| ||||||||| | ||||||||||||||||||| |||||||||||||||    
T  13493408 aaaaggatgtataaa-tttatattgattgccctaggcagttgagttg-ttttgtaacataaac 13493348  T

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Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 390 - 455
Target Start/End: Complemental strand, 34066468 - 34066402
Alignment:
Q  390 ggtgccctaggcagttgagttgatttt-gtaacataaactgattaaaaacaaagaaagattggtttt 455  Q
    |||||||||||||||||| |||||||| |||||||||||  |||||||||||  |||||||||||||    
T  34066468 ggtgccctaggcagttgaattgatttttgtaacataaacgaattaaaaacaataaaagattggtttt 34066402  T

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Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 273 - 438
Target Start/End: Complemental strand, 1936869 - 1936701
Alignment:
Q  273 gatatttggcaagtgaaccaaattcaatccaagtaat-aaaaattcgtttctacgaggattgtatttaaattctacgtagcaattttattattaaaaagg 371  Q
    ||||||||||||||||||||||||||||| ||||||| || ||||| |||| || | ||   |  |||| |||||| | ||||||| |||| ||| || |    
T  1936869 gatatttggcaagtgaaccaaattcaatcgaagtaatgaataattcatttccacaatgaccattgttaacttctacttggcaatttcattagtaataacg 1936770  T
Q  372 atgtataaaatttatattgg-tgccctaggcagttgagttgatt-ttgtaacataaactg-attaaaaac 438  Q
    |||||| ||||| | || || || |||||||||||||||||||| ||||| ||||||||| |||||||||    
T  1936769 atgtattaaattca-atgggttgacctaggcagttgagttgattgttgtatcataaactgaattaaaaac 1936701  T

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Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 391 - 460
Target Start/End: Complemental strand, 8435358 - 8435289
Alignment:
Q  391 gtgccctaggcagttgagttga-ttttgtaacataaactgattaaaaacaaagaaagattggtttttagaa 460  Q
    |||||||||||||||||||||| |||||||||||||||  | |||||||||  |||| |||||||||||||    
T  8435358 gtgccctaggcagttgagttgatttttgtaacataaacataataaaaacaataaaag-ttggtttttagaa 8435289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 427
Target Start/End: Complemental strand, 13496224 - 13496073
Alignment:
Q  276 atttggcaagtgaaccaaattcaatccaagtaataaa--aattcgtttctacgaggattgtatttaaattctacgtagcaattttattattaaaaaggat 373  Q
    ||||| |||||||||||||  | ||| ||||||||||  ||||||| || |||||||  ||  |||| ||||||   |||||||  |||| |||||||||    
T  13496224 atttgacaagtgaaccaaaa-ctatcgaagtaataaataaattcgtatccacgaggaccgttgttaatttctactcggcaatttctttatcaaaaaggat 13496126  T
Q  374 gtataaaatttatattg-gtgccctaggcagttgagttgattttgtaacataaac 427  Q
    |||| ||||||||||||  || ||||||||||||| ||| |||||||||||||||    
T  13496125 gtat-aaatttatattgattgtcctaggcagttgaattg-ttttgtaacataaac 13496073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 455
Target Start/End: Original strand, 16190299 - 16190365
Alignment:
Q  389 tggtgccctaggcagttgagttgat-tttgtaacataaactgattaaaaacaaagaaagattggtttt 455  Q
    |||||||||||| | |||||||||| ||||||||||||||  ||||||||| || |||||||||||||    
T  16190299 tggtgccctaggaaattgagttgatgtttgtaacataaacgaattaaaaac-aataaagattggtttt 16190365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 396 - 455
Target Start/End: Original strand, 23990262 - 23990322
Alignment:
Q  396 ctaggcagttgagttgatttt-gtaacataaactgattaaaaacaaagaaagattggtttt 455  Q
    ||||||||||||||| ||||| |||||||| || ||||||||||||  |||||| ||||||    
T  23990262 ctaggcagttgagttaatttttgtaacatatacggattaaaaacaataaaagataggtttt 23990322  T

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Target: scaffold0363 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 392 - 440
Target Start/End: Original strand, 133 - 180
Alignment:
Q  392 tgccctaggcagttgagttgattttgtaacataaactgattaaaaacaa 440  Q
    |||||||||||||||||||| |||| ||||||||||  |||||||||||    
T  133 tgccctaggcagttgagttggtttt-taacataaacaaattaaaaacaa 180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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