View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4043_high_10 (Length: 247)
Name: NF4043_high_10
Description: NF4043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4043_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 2 - 242
Target Start/End: Original strand, 113910 - 114143
Alignment:
| Q |
2 |
aacatgtgaacataacatgacctttttaaagcctcccatatatagctacgcaaaacacgctcttcctacgtcattttcggattcattctctccctcatcc |
101 |
Q |
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| T |
113910 |
aacatgtgaacataacatgacctttttaaagcctcgcata----gctacgcaaaacacgctcttcctacgtcattttcggattcattctctccctcatcc |
114005 |
T |
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| Q |
102 |
taatcttaattaatgtcattcattattcaagaacacaagaaacaaaacagaatcttgtttcaataaataaagaaaaaa-ttgtttgtaaattgggggtga |
200 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
114006 |
taatc----ttaatgtcattcattattcaagaacacaagaaacaaaacagaatcttgtttcaataaataaagaaaaaacttgtttgtaaattgggggtga |
114101 |
T |
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| Q |
201 |
ccggtcacaacaactagacctggttatatcccttcgtctctg |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
114102 |
ccggtcacaacaactagacctggttatatcccttcgtctctg |
114143 |
T |
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