View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4043_high_4 (Length: 427)
Name: NF4043_high_4
Description: NF4043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4043_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 31 - 421
Target Start/End: Complemental strand, 10120755 - 10120365
Alignment:
| Q |
31 |
agaattggggaacacagaaactactcccggcatttctggtcacattcaaaccaaataaataagtaaacaacaaaaattataggatcctttaagcattgaa |
130 |
Q |
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| T |
10120755 |
agaattggggaacacagaaactactcccggcatttctggtcacattcaaaccaaataaataagtaaacaacaaaaattataggatactttaagcattgaa |
10120656 |
T |
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| Q |
131 |
gctttaaggaagaggaaaatgtcactgacttgaaatttggtaagcttgttcattggtcaactttgctgcaaagcctttgaaaccatgtttgtagctgcaa |
230 |
Q |
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| T |
10120655 |
gctttaaggaagaggaaaatgtcactgacttgaaatttggtaagcttgttcattggtcaactttgctgcaaagcctttgaaaccatgtttgtagctgtaa |
10120556 |
T |
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| Q |
231 |
atatgtgaagcctgtgcttgttcaacactgttaaaaaataaggaaaaatcacatacctgaaattacatagaaaaagggatattccaaatgaatacaagaa |
330 |
Q |
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| T |
10120555 |
atatgtgaagcctgtgcttgttcaacactgttaaaaaataaggaaaaatcacatacctgaaattacatagaaaaagggatattccaaatgaatacaagaa |
10120456 |
T |
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| Q |
331 |
ttaatttcttaccttccactatgaacatctgctagcatttgatgattatgcttcagaatatcatctgagtcttgatcactacctttgcttc |
421 |
Q |
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| T |
10120455 |
ttaatttcttaccttccactatgaacatctgctagcatttgatgattatgcttcagaatatcatctgagtcttgatcactacctttgcttc |
10120365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 255
Target Start/End: Original strand, 30630322 - 30630415
Alignment:
| Q |
162 |
gaaatttggtaagcttgttcattggtcaactttgctgcaaagcctttgaaaccatgtttgtagctgcaaatatgtgaagcctgtgcttgttcaa |
255 |
Q |
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| T |
30630322 |
gaaattttggaagcttgttcatcagtgagcttagctgcaaagcctctgaatccatgtctatagctataaatatgagaagcttgtgcttcttcaa |
30630415 |
T |
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