View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4043_low_11 (Length: 251)

Name: NF4043_low_11
Description: NF4043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4043_low_11
NF4043_low_11
[»] chr5 (7 HSPs)
chr5 (19-152)||(4560831-4560964)
chr5 (7-124)||(508968-509085)
chr5 (7-124)||(4126468-4126585)
chr5 (7-85)||(19082303-19082381)
chr5 (21-65)||(4561035-4561079)
chr5 (21-65)||(4126583-4126627)
chr5 (7-51)||(4560993-4561037)
[»] chr3 (2 HSPs)
chr3 (21-152)||(27001886-27002020)
chr3 (7-85)||(40108608-40108686)
[»] chr1 (3 HSPs)
chr1 (7-124)||(44005996-44006114)
chr1 (22-69)||(44005970-44006017)
chr1 (7-85)||(23303881-23303959)
[»] chr4 (1 HSPs)
chr4 (7-85)||(36757466-36757544)
[»] chr7 (2 HSPs)
chr7 (15-69)||(3777561-3777615)
chr7 (15-92)||(3777643-3777720)
[»] scaffold0477 (2 HSPs)
scaffold0477 (45-85)||(1518-1558)
scaffold0477 (41-85)||(1715-1759)
[»] chr6 (2 HSPs)
chr6 (45-85)||(4650501-4650541)
chr6 (41-85)||(4650698-4650742)


Alignment Details
Target: chr5 (Bit Score: 106; Significance: 4e-53; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 19 - 152
Target Start/End: Complemental strand, 4560964 - 4560831
Alignment:
Q  19 tccaaattgacaaccatataatcaaattcaaaatgacagtgttcaaattgataatagagccaaaactggactccaatactgccaaaacataccaggaaaa 118  Q
    |||| ||||||||||| |||| |||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  4560964 tccagattgacaaccacataaccaaattcaaaatgacaatattcaaattgataatagaaccaaaactggactccaatactgccaaaacataccgggaaaa 4560865  T
Q  119 aaggaaagaaatatcagtaacagatgaacaagaa 152  Q
    ||||||||||||||||||||||||||||||||||    
T  4560864 aaggaaagaaatatcagtaacagatgaacaagaa 4560831  T

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Target: chr5; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 7 - 124
Target Start/End: Complemental strand, 509085 - 508968
Alignment:
Q  7 aaaacaacggtgtccaaattgacaaccatataatcaaattcaaaatgacagtgttcaaattgataatagagccaaaactggactccaatactgccaaaac 106  Q
    ||||| ||||||| |||||||||||| |||||||||||||||||||||| ||||||||||| |||||||| |||||| |||||||||| | |||||||||    
T  509085 aaaactacggtgttcaaattgacaacaatataatcaaattcaaaatgacggtgttcaaatttataatagaaccaaaattggactccaagattgccaaaac 508986  T
Q  107 ataccaggaaaaaaggaa 124  Q
    ||| || |||||||||||    
T  508985 atatcaagaaaaaaggaa 508968  T

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Target: chr5; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 7 - 124
Target Start/End: Complemental strand, 4126585 - 4126468
Alignment:
Q  7 aaaacaacggtgtccaaattgacaaccatataatcaaattcaaaatgacagtgttcaaattgataatagagccaaaactggactccaatactgccaaaac 106  Q
    ||||| ||| ||| |||||||||||| |||||  ||| ||||||||||| ||||||||||||||||||||  ||||||| |||||||| |||||||||||    
T  4126585 aaaactacgctgttcaaattgacaacaatatagccaagttcaaaatgacggtgttcaaattgataatagaatcaaaactagactccaagactgccaaaac 4126486  T
Q  107 ataccaggaaaaaaggaa 124  Q
    ||| || |||||||||||    
T  4126485 atatcaagaaaaaaggaa 4126468  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 19082303 - 19082381
Alignment:
Q  7 aaaacaacggtgtccaaattgacaaccatataatcaaattcaaaatgacagtgttcaaattgataatagagccaaaact 85  Q
    ||||| ||||||| |||||||| ||| |||||| |||||| ||||| || ||||||||||||| |||||| ||||||||    
T  19082303 aaaactacggtgttcaaattgataacaatataaccaaatttaaaataacggtgttcaaattgacaatagaaccaaaact 19082381  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 4561079 - 4561035
Alignment:
Q  21 caaattgacaaccatataatcaaattcaaaatgacagtgttcaaa 65  Q
    |||||||||| | |||||| |||||||||||||||||||||||||    
T  4561079 caaattgacagcaatataaccaaattcaaaatgacagtgttcaaa 4561035  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 4126627 - 4126583
Alignment:
Q  21 caaattgacaaccatataatcaaattcaaaatgacagtgttcaaa 65  Q
    |||||||||||| |||||||||||||||||| ||| || ||||||    
T  4126627 caaattgacaacaatataatcaaattcaaaacgacggtattcaaa 4126583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 4561037 - 4560993
Alignment:
Q  7 aaaacaacggtgtccaaattgacaaccatataatcaaattcaaaa 51  Q
    |||| |||||||| |||||||||||| |||| |||||||||||||    
T  4561037 aaaataacggtgttcaaattgacaacaatatgatcaaattcaaaa 4560993  T

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Target: chr3 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 21 - 152
Target Start/End: Complemental strand, 27002020 - 27001886
Alignment:
Q  21 caaattgacaaccatataatcaaattcaaaatgacagtgttcaaattgataatagagccaaaactggactccaatactgccaaaacataccaggaaaaaa 120  Q
    |||||||||||| |||||  ||||||||||||||| ||||||||||||||||||||  ||||||| |||||||| |||||||||||||| || |||||||    
T  27002020 caaattgacaacaatatagccaaattcaaaatgacggtgttcaaattgataatagaatcaaaactagactccaagactgccaaaacatatcaagaaaaaa 27001921  T
Q  121 g---gaaagaaatatcagtaacagatgaacaagaa 152  Q
    |   |||| ||| |||| |||||||||||||||||    
T  27001920 ggaagaaaaaaaaatcattaacagatgaacaagaa 27001886  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 40108608 - 40108686
Alignment:
Q  7 aaaacaacggtgtccaaattgacaaccatataatcaaattcaaaatgacagtgttcaaattgataatagagccaaaact 85  Q
    ||||| ||||||| |||||||| ||| |||||| |||||| ||||| || ||||||||||||| |||||| ||||||||    
T  40108608 aaaactacggtgttcaaattgataacaatataaccaaatttaaaataacggtgttcaaattgacaatagaaccaaaact 40108686  T

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Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 7 - 124
Target Start/End: Original strand, 44005996 - 44006114
Alignment:
Q  7 aaaacaacggtgtccaaattgacaaccatataatcaaattcaaaatgacagtgttcaaattgataatagagccaaaactggact-ccaatactgccaaaa 105  Q
    ||||| ||||||| |||||||||||| |||||  |||||||||||| || || ||||||||||||||||| | |||||| |||| |||| ||||||||||    
T  44005996 aaaacgacggtgttcaaattgacaacaatatagccaaattcaaaataacggtattcaaattgataatagaactaaaactagactcccaagactgccaaaa 44006095  T
Q  106 cataccaggaaaaaaggaa 124  Q
    |||| || |||||||||||    
T  44006096 catatcaagaaaaaaggaa 44006114  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 69
Target Start/End: Original strand, 44005970 - 44006017
Alignment:
Q  22 aaattgacaaccatataatcaaattcaaaatgacagtgttcaaattga 69  Q
    ||||||||||| |||||||||||||||||| ||| |||||||||||||    
T  44005970 aaattgacaacaatataatcaaattcaaaacgacggtgttcaaattga 44006017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 23303959 - 23303881
Alignment:
Q  7 aaaacaacggtgtccaaattgacaaccatataatcaaattcaaaatgacagtgttcaaattgataatagagccaaaact 85  Q
    ||||| ||||||| |||||||| ||| |||||| |||||| | ||| |||||||||||||||| |||| | ||||||||    
T  23303959 aaaactacggtgttcaaattgataacaatataaccaaatttataataacagtgttcaaattgagaatacaaccaaaact 23303881  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 36757466 - 36757544
Alignment:
Q  7 aaaacaacggtgtccaaattgacaaccatataatcaaattcaaaatgacagtgttcaaattgataatagagccaaaact 85  Q
    ||||| ||||||| |||||||| ||| |||||| |||||| ||||| || ||||||||||||| |||||| ||||||||    
T  36757466 aaaactacggtgttcaaattgataacaatataaccaaatttaaaataacggtgttcaaattgacaatagaaccaaaact 36757544  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 69
Target Start/End: Original strand, 3777561 - 3777615
Alignment:
Q  15 ggtgtccaaattgacaaccatataatcaaattcaaaatgacagtgttcaaattga 69  Q
    ||||| |||||||||||| ||||||||||||||||||| || ||||| |||||||    
T  3777561 ggtgttcaaattgacaacaatataatcaaattcaaaataacggtgtttaaattga 3777615  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 92
Target Start/End: Original strand, 3777643 - 3777720
Alignment:
Q  15 ggtgtccaaattgacaaccatataatcaaattcaaaatgacagtgttcaaattgataatagagccaaaactggactcc 92  Q
    ||||| ||||| ||| || |||||| ||||||||||||||| ||||| ||||||| |||| | | |||||||||||||    
T  3777643 ggtgttcaaatcgaccacaatataaccaaattcaaaatgacggtgtttaaattgacaataaaactaaaactggactcc 3777720  T

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Target: scaffold0477 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 1518 - 1558
Alignment:
Q  45 ttcaaaatgacagtgttcaaattgataatagagccaaaact 85  Q
    ||||||||||| ||||||||||||| |||||| ||||||||    
T  1518 ttcaaaatgacggtgttcaaattgacaatagaaccaaaact 1558  T

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Target: scaffold0477; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 1715 - 1759
Alignment:
Q  41 caaattcaaaatgacagtgttcaaattgataatagagccaaaact 85  Q
    ||||||||||||| | ||||||||||||| |||||| ||||||||    
T  1715 caaattcaaaatgtcggtgttcaaattgacaatagaaccaaaact 1759  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 4650501 - 4650541
Alignment:
Q  45 ttcaaaatgacagtgttcaaattgataatagagccaaaact 85  Q
    ||||||||||| ||||||||||||| |||||| ||||||||    
T  4650501 ttcaaaatgacggtgttcaaattgacaatagaaccaaaact 4650541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 4650698 - 4650742
Alignment:
Q  41 caaattcaaaatgacagtgttcaaattgataatagagccaaaact 85  Q
    ||||||||||||| | ||||||||||||| |||||| ||||||||    
T  4650698 caaattcaaaatgtcggtgttcaaattgacaatagaaccaaaact 4650742  T

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