View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4043_low_12 (Length: 250)
Name: NF4043_low_12
Description: NF4043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4043_low_12 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 11542376 - 11542613
Alignment:
| Q |
13 |
tgaagcaagaaaatgctcagctgaaacaagaggctagtgaattcatttatttgattaatctcttttaaatctatatcaataacatagttcttaattacgt |
112 |
Q |
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| T |
11542376 |
tgaagcaagaaaatgctcagctgaaacaagaggctagtgaattcatttatttgattaatctcttttaaatctatatcaataacatagttcttaattacgt |
11542475 |
T |
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| Q |
113 |
ttttatccatgcataaatacctaattatatttgtgaatttggttatgactttcagtgtgagaaaatgtctagccttcttgcaagttacatggagaaaaag |
212 |
Q |
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| T |
11542476 |
ttttatccatgcataaatacctaattatatttgtgaatttggttatgactttcagtgtgagaaaatgtctagccttcttgcaagttacatggagaaaaag |
11542575 |
T |
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| Q |
213 |
atatcacgactggagtttgagcaagctcttaagtctat |
250 |
Q |
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| T |
11542576 |
atatcacgaccggagtttgagcaagctcttaagtctat |
11542613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 149 - 250
Target Start/End: Original strand, 11556336 - 11556437
Alignment:
| Q |
149 |
atttggttatgactttcagtgtgagaaaatgtctagccttcttgcaagttacatggagaaaaagatatcacgactggagtttgagcaagctcttaagtct |
248 |
Q |
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| T |
11556336 |
atttggttataactttcagtgtgagaaagtgtctagccttcttgcaagttacatggagaaaaagatatcacgaccggaatttgagcaagctcttaagtct |
11556435 |
T |
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| Q |
249 |
at |
250 |
Q |
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|| |
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| T |
11556436 |
at |
11556437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 11556233 - 11556304
Alignment:
| Q |
9 |
gagatgaagcaagaaaatgctcagctgaaacaagaggctagtgaattcatttatttgattaatctcttttaa |
80 |
Q |
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| T |
11556233 |
gagatgaagcaagaaaatgctcagctgaaacaagaggctagtgaattcatttatttgattaatctcttttaa |
11556304 |
T |
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