View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4043_low_13 (Length: 250)
Name: NF4043_low_13
Description: NF4043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4043_low_13 |
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| [»] chr7 (2 HSPs) |
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| [»] scaffold0130 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 10 - 250
Target Start/End: Original strand, 4480341 - 4480581
Alignment:
| Q |
10 |
gcagagacacagtcagaggcaacaaattcaatacatatgattaatcacatgttgttgcatggaaaatgacattttcatcaatacaaattagagattgcaa |
109 |
Q |
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| T |
4480341 |
gcagagacacagtcagaggcaacaaattcaatacatatgattaatcacatgttgttgcatggaaaatgacattttcatcaatacaaattagagattgcaa |
4480440 |
T |
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| Q |
110 |
gaaattgagtaaattgctaatcaattgagactgagatagataagaataaatggatgaacaaaattagcacgttgtgttttttcaagactaatagtggcgc |
209 |
Q |
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| T |
4480441 |
gaaattgagtaaattgctaatcaattgagactgagatagataagaagaaatggatgaacaaaattagcacgttgtgttttttcaagactaatagtggcgc |
4480540 |
T |
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| Q |
210 |
actcactccctactgtttttgcatcaatcaccaattacttc |
250 |
Q |
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| T |
4480541 |
actcattccctactgtttttgcatcaatcaccaattacttc |
4480581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 87 - 174
Target Start/End: Complemental strand, 1479647 - 1479560
Alignment:
| Q |
87 |
tcaatacaaattagagattgcaagaaattgagtaaattgctaatcaattgagactgagatagataagaataaatggatgaacaaaatt |
174 |
Q |
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| T |
1479647 |
tcaatacaaatgagagattgcaagaaagtgagtcaattgctaatcaattgagactgggataggtaagaataaatcaatgaacaaaatt |
1479560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0130 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold0130
Description:
Target: scaffold0130; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 28 - 136
Target Start/End: Complemental strand, 23554 - 23448
Alignment:
| Q |
28 |
gcaacaaattcaatacatatgattaatcacatgttgttgcatggaaaatgacattttcatcaatacaaattagagattgcaagaaattgagtaaattgct |
127 |
Q |
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| T |
23554 |
gcaacaaattcaatacatataattaatcacacattgttgtatggaaaatgacattttgatcaacacagat--gagattgcaagaaagtgagtcaattgct |
23457 |
T |
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| Q |
128 |
aatcaattg |
136 |
Q |
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| T |
23456 |
aatcaattg |
23448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 69 - 146
Target Start/End: Complemental strand, 34862825 - 34862748
Alignment:
| Q |
69 |
tggaaaatgacattttcatcaatacaaattagagattgcaagaaattgagtaaattgctaatcaattgagactgagat |
146 |
Q |
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| T |
34862825 |
tggaaaatgacattttgatcaatataaataagagattgcaagaaagtgagtcaattggtaatcaatatagactgagat |
34862748 |
T |
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