View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4043_low_16 (Length: 244)
Name: NF4043_low_16
Description: NF4043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4043_low_16 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 53971099 - 53971318
Alignment:
| Q |
1 |
atgaaatacatgtcggaacattttgtgggtcctgccaattgccctcataaattccatcctccatctcctacaataagacggagggggtagtaagactaag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53971099 |
atgaaatacatgtcggaacattttgtgggtcctgccaattgtcctcataaattccatcctccatctcctacaataagacggagggggtagtaag------ |
53971192 |
T |
|
| Q |
101 |
acatgtagaggtatatttaccaaattaaattaaatcatcaaattatcctaatcatagtatcatacctgatgaatggtaagatgttgaagtttcggactat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53971193 |
acatgtagaggtatatttaccaaattaaattaaatcatcaaattatcctaatcatagtatcatacctgatgaatggtaagatgttgaagtttcggactat |
53971292 |
T |
|
| Q |
201 |
gttagagcacgtctagcatccacctc |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
53971293 |
gttagagcacgtctagcatccacctc |
53971318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 53984804 - 53985021
Alignment:
| Q |
1 |
atgaaatacatgtcggaacattttgtgggtcctgccaattgccctcataaattccatcctccatctcctacaataagacggagggggtagtaagactaag |
100 |
Q |
| |
|
||||||| || ||||||| ||||||||| | |||||| || ||||||||||||||| ||| || |||| ||||||| |||||| | | |||||| |
|
|
| T |
53984804 |
atgaaatgcacgtcggaatattttgtggatagtgccaaatgtcctcataaattccattctctatttcctgtaataagatggagggagcattaagacgtg- |
53984902 |
T |
|
| Q |
101 |
acatgtagaggtatatttaccaaattaaattaaatcatcaaattatcctaatcatagtatcatacctgatgaatggtaagatgttgaagtttcggactat |
200 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |||||||||||| |||||| | | | ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
53984903 |
---tgtagaggtagatttaccaaattaaattaaatcgtcaaattatccttatcata-tcttaaacctgatgaatggtaagatgttgaagtttgggactat |
53984998 |
T |
|
| Q |
201 |
gttagagcacgtctagcatccac |
223 |
Q |
| |
|
||| |||||||||||||||||| |
|
|
| T |
53984999 |
gttgaagcacgtctagcatccac |
53985021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University