View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4043_low_18 (Length: 239)
Name: NF4043_low_18
Description: NF4043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4043_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 11542625 - 11542846
Alignment:
| Q |
1 |
caagagactatgaatgctcaagtcatgtgcatgataatctagctatgtggggaggtgtgctagggcaaacctcaacgcaagactatgatgcacaaaagat |
100 |
Q |
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| T |
11542625 |
caagagactatgaatgctcaagtcatgtgcatggtaatctagctacgtggggaggtgtgctagggcaaacctcaacacaaaactatgatgcacaaaagat |
11542724 |
T |
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| Q |
101 |
aactatgtcacaagttgtagatgctgcaatggatgaattggttaggcttgtgagagttaatgagcctttttgggtcaaatctccaaatattcaagatggg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
11542725 |
aactatgtcacaagttgtagatgctgcaatggatgaattggttaggcttgtgagagttaatgagcctttttgggtcaaatctccaaatactcaagatggg |
11542824 |
T |
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| Q |
201 |
tacactcttcatcgcgaaagtt |
222 |
Q |
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|||||| ||||||||||||||| |
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| T |
11542825 |
tacacttttcatcgcgaaagtt |
11542846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 11556449 - 11556667
Alignment:
| Q |
1 |
caagagactatgaatgctcaagtcatgtgcatgataatctagctatgtggggaggtgtgctagggcaaacctcaacgcaagactatgatgcacaaaagat |
100 |
Q |
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|||||||||||||||||||||||||| |||| | |||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
11556449 |
caagagactatgaatgctcaagtcatatgcaaggtaatctagttatgtggggaggtgtgctagggcaaacctcaacacaaaactatgatgcacaaaagat |
11556548 |
T |
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| Q |
101 |
aactatgtcacaagttgtagatgctgcaatggatgaattggttaggcttgtgagagttaatgagcctttttgggtcaaatctccaaatattcaagatggg |
200 |
Q |
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| T |
11556549 |
aactatgtctcaagttgtagatgctgcaatggatgaattggttaggcttgtgagagttgatgagcctttttgggtcaaaccttcaaatactcaagatggg |
11556648 |
T |
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| Q |
201 |
tacactcttcatcgcgaaa |
219 |
Q |
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|||||||||||||| |||| |
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| T |
11556649 |
tacactcttcatcgtgaaa |
11556667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 129 - 222
Target Start/End: Complemental strand, 22824682 - 22824589
Alignment:
| Q |
129 |
atggatgaattggttaggcttgtgagagttaatgagcctttttgggtcaaatctccaaatattcaagatgggtacactcttcatcgcgaaagtt |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||| |||||||||||||||||||||||| ||||||| |
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| T |
22824682 |
atggatgaattggttaggcttgtgagagttaatgagcctttttggggcaaaccttcaaatagtcaagatgggtacactcttcatcgtgaaagtt |
22824589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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