View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4043_low_3 (Length: 461)

Name: NF4043_low_3
Description: NF4043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4043_low_3
NF4043_low_3
[»] chr7 (17 HSPs)
chr7 (251-448)||(37405503-37405700)
chr7 (269-392)||(28124697-28124820)
chr7 (269-392)||(28126524-28126647)
chr7 (269-392)||(4895583-4895706)
chr7 (269-443)||(20046554-20046729)
chr7 (269-392)||(44963162-44963285)
chr7 (325-448)||(34844107-34844231)
chr7 (386-448)||(21631283-21631345)
chr7 (254-342)||(25471931-25472018)
chr7 (396-456)||(21633236-21633296)
chr7 (397-446)||(21631055-21631104)
chr7 (386-447)||(29598027-29598088)
chr7 (386-448)||(21633014-21633076)
chr7 (330-446)||(36989502-36989621)
chr7 (383-447)||(3233013-3233077)
chr7 (255-328)||(4880196-4880271)
chr7 (269-301)||(44962282-44962314)
[»] chr6 (18 HSPs)
chr6 (255-448)||(15868377-15868570)
chr6 (254-448)||(15866564-15866758)
chr6 (255-448)||(33866084-33866277)
chr6 (255-448)||(33869231-33869424)
chr6 (269-392)||(5376876-5377000)
chr6 (269-392)||(5378731-5378855)
chr6 (271-392)||(1088762-1088883)
chr6 (269-392)||(19645409-19645532)
chr6 (254-447)||(14611068-14611259)
chr6 (269-366)||(15149180-15149277)
chr6 (255-340)||(32079895-32079980)
chr6 (297-375)||(9415095-9415173)
chr6 (321-447)||(14618975-14619099)
chr6 (255-328)||(14620496-14620569)
chr6 (269-392)||(28884363-28884487)
chr6 (385-443)||(24544733-24544791)
chr6 (54-92)||(18367923-18367961)
chr6 (54-90)||(16488524-16488560)
[»] chr1 (15 HSPs)
chr1 (255-448)||(3284487-3284680)
chr1 (255-448)||(3282786-3282979)
chr1 (255-448)||(9312014-9312207)
chr1 (255-448)||(9310397-9310590)
chr1 (254-448)||(902061-902254)
chr1 (269-392)||(17449310-17449433)
chr1 (269-392)||(16808688-16808811)
chr1 (255-361)||(37664695-37664801)
chr1 (255-361)||(37674417-37674523)
chr1 (255-361)||(37702171-37702277)
chr1 (255-328)||(5924947-5925020)
chr1 (316-392)||(48941646-48941722)
chr1 (269-320)||(48940675-48940726)
chr1 (261-308)||(36580553-36580600)
chr1 (54-92)||(10577680-10577718)
[»] scaffold0251 (1 HSPs)
scaffold0251 (255-456)||(6211-6412)
[»] chr5 (7 HSPs)
chr5 (254-448)||(39787112-39787306)
chr5 (261-392)||(25076224-25076356)
chr5 (261-392)||(25134193-25134325)
chr5 (384-447)||(33689980-33690043)
chr5 (54-92)||(30098983-30099021)
chr5 (325-369)||(6569888-6569932)
chr5 (54-90)||(21814350-21814386)
[»] chr4 (19 HSPs)
chr4 (254-446)||(23985758-23985949)
chr4 (255-447)||(3529202-3529393)
chr4 (269-392)||(7040360-7040483)
chr4 (269-392)||(23564784-23564907)
chr4 (269-392)||(23566458-23566581)
chr4 (269-392)||(52520600-52520723)
chr4 (269-392)||(18656107-18656230)
chr4 (269-392)||(52518758-52518881)
chr4 (255-369)||(52545234-52545347)
chr4 (296-392)||(54296454-54296550)
chr4 (255-447)||(24807409-24807600)
chr4 (269-361)||(3274580-3274672)
chr4 (309-448)||(51295202-51295341)
chr4 (386-448)||(5653226-5653288)
chr4 (255-319)||(18395816-18395880)
chr4 (255-302)||(18320063-18320110)
chr4 (255-302)||(18398573-18398620)
chr4 (368-447)||(18395698-18395776)
chr4 (54-92)||(5414106-5414144)
[»] scaffold0057 (1 HSPs)
scaffold0057 (246-392)||(58762-58908)
[»] chr8 (11 HSPs)
chr8 (269-392)||(30224229-30224352)
chr8 (269-392)||(5567425-5567548)
chr8 (269-392)||(3375532-3375655)
chr8 (269-392)||(6428739-6428862)
chr8 (269-392)||(25249002-25249128)
chr8 (269-384)||(3379231-3379346)
chr8 (269-392)||(31032112-31032231)
chr8 (255-339)||(14935562-14935646)
chr8 (298-392)||(36535941-36536035)
chr8 (54-92)||(34450966-34451004)
chr8 (266-302)||(4676048-4676083)
[»] chr2 (6 HSPs)
chr2 (269-392)||(29758119-29758242)
chr2 (386-447)||(20957729-20957790)
chr2 (386-446)||(20957557-20957617)
chr2 (262-320)||(18739664-18739722)
chr2 (342-392)||(20516053-20516103)
chr2 (54-92)||(24009371-24009409)
[»] chr3 (12 HSPs)
chr3 (269-392)||(17402891-17403015)
chr3 (277-443)||(6789627-6789791)
chr3 (314-392)||(1140045-1140123)
chr3 (269-369)||(20302625-20302725)
chr3 (269-361)||(20327167-20327259)
chr3 (125-165)||(46299764-46299804)
chr3 (24-54)||(46299717-46299747)
chr3 (409-446)||(9032760-9032797)
chr3 (251-292)||(17579280-17579321)
chr3 (312-369)||(41874441-41874497)
chr3 (269-301)||(1140012-1140044)
chr3 (188-216)||(46300108-46300136)
[»] scaffold0006 (1 HSPs)
scaffold0006 (254-369)||(39129-39243)


Alignment Details
Target: chr7 (Bit Score: 174; Significance: 2e-93; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 251 - 448
Target Start/End: Complemental strand, 37405700 - 37405503
Alignment:
Q  251 tttttattagagtatgaataatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaat 350  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||    
T  37405700 tttttattagagtatgaataatcaactatagttagttgatagataaactagagttagtagcttggttagaagttagttagagttagttactcaaactaat 37405601  T
Q  351 ctctatatataggaacactattgtattcattcattatcttttgttaaatctagtttactctactatgagtcactatgggtatctcccacatgaataca 448  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  37405600 ctctatatataggaacactattgtactcattcactatcttttgttaaatctagtttactctcctatgagtcactatgggtatctcccacatgaataca 37405503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 269 - 392
Target Start/End: Complemental strand, 28124820 - 28124697
Alignment:
Q  269 taatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctctatatataggaacac 368  Q
    ||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  28124820 taatcaactatagttagttgataagtaaactagagttagtagtttggttagaagttagttagagttagttactcaaactaatctctatatataggaacac 28124721  T
Q  369 tattgtattcattcattatctttt 392  Q
    ||||||| |||||||| |||||||    
T  28124720 tattgtactcattcatcatctttt 28124697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 269 - 392
Target Start/End: Complemental strand, 28126647 - 28126524
Alignment:
Q  269 taatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctctatatataggaacac 368  Q
    ||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  28126647 taatcaactatagttagttgataagtaaactagagttagtagtttggttagaagttagttagagttagttactcaaactaatctctatatataggaacac 28126548  T
Q  369 tattgtattcattcattatctttt 392  Q
    ||||||| |||||||| |||||||    
T  28126547 tattgtactcattcatcatctttt 28126524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 269 - 392
Target Start/End: Original strand, 4895583 - 4895706
Alignment:
Q  269 taatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctctatatataggaacac 368  Q
    ||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  4895583 taatcaactatagttagttgataagtaaactagagttagtagtttggttagaagttagttagagttatttactcaaactaatctctatatataggaacac 4895682  T
Q  369 tattgtattcattcattatctttt 392  Q
    ||||||| |||||||| |||||||    
T  4895683 tattgtactcattcatcatctttt 4895706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 269 - 443
Target Start/End: Complemental strand, 20046729 - 20046554
Alignment:
Q  269 taatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctc-tatatataggaaca 367  Q
    ||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  20046729 taatcaactatagttagttgataagtaaactagagttagtagtttggttagaagttagttagagttagttactcaaactaatctcttatatataggaaca 20046630  T
Q  368 ctattgtattcattcattatcttttgttaaatctagtttactctactatgagtcactatgggtatctcccacatga 443  Q
    |||||||| ||||||| ||||||||  | |||||| |    ||||| ||||||  ||||| |||||||||||||||    
T  20046629 ctattgtactcattcaatatctttttatcaatctattcatttctacaatgagtttctatgagtatctcccacatga 20046554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 269 - 392
Target Start/End: Original strand, 44963162 - 44963285
Alignment:
Q  269 taatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctctatatataggaacac 368  Q
    ||||||||||||||||||||||| |||||||||  ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  44963162 taatcaactatagttagttgataagtaaactagggttagtagcttggttagaagttagttagagttagttactcaaattaatctctatatataggaacac 44963261  T
Q  369 tattgtattcattcattatctttt 392  Q
    ||||||| |||||||| |||||||    
T  44963262 tattgtactcattcatcatctttt 44963285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 325 - 448
Target Start/End: Original strand, 34844107 - 34844231
Alignment:
Q  325 agttggagttagttactcaaactaatctctatatataggaacactattgtattcattcatt--atcttttgttaaatctagtttactctactatgagtca 422  Q
    |||| ||||||||||| ||| |||| |||||||||||||||||||  |||||   |||| |  ||||||| | |||||||||||||||||||||||||||    
T  34844107 agttagagttagttacacaa-ctaaactctatatataggaacactcatgtatcatttcaatccatcttttatcaaatctagtttactctactatgagtca 34844205  T
Q  423 ctatgggtatctcccacatgaataca 448  Q
    ||||||||||||||||||||||||||    
T  34844206 ctatgggtatctcccacatgaataca 34844231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 386 - 448
Target Start/End: Complemental strand, 21631345 - 21631283
Alignment:
Q  386 atcttttgttaaatctagtttactctactatgagtcactatgggtatctcccacatgaataca 448  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  21631345 atcttttatcaaatctagtttactctactatgagtcactatgggtatctcccacattaataca 21631283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 254 - 342
Target Start/End: Complemental strand, 25472018 - 25471931
Alignment:
Q  254 ttattagagtatgaataatcaactatagttagttgataggtaaactagaattagtagcttggtt-agaagttagttggagttagttactc 342  Q
    |||||| |||||||||||| ||||||||||||||||||||| ||||||| ||||||| |||||| || ||||||  ||||||||||||||    
T  25472018 ttattatagtatgaataattaactatagttagttgataggttaactagagttagtaggttggttcagtagttag--ggagttagttactc 25471931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 396 - 456
Target Start/End: Complemental strand, 21633296 - 21633236
Alignment:
Q  396 aaatctagtttactctactatgagtcactatgggtatctcccacatgaatacatctgtgct 456  Q
    ||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||| ||||    
T  21633296 aaatctaatttactctactatgggtcactatgagtatctcccacatgaatacatctatgct 21633236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 397 - 446
Target Start/End: Complemental strand, 21631104 - 21631055
Alignment:
Q  397 aatctagtttactctactatgagtcactatgggtatctcccacatgaata 446  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  21631104 aatctagtttactctactatgagtcactatgtgtatctcccacattaata 21631055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 386 - 447
Target Start/End: Complemental strand, 29598088 - 29598027
Alignment:
Q  386 atcttttgttaaatctagtttactctactatgagtcactatgggtatctcccacatgaatac 447  Q
    ||||||| | |||||||||| | ||||||||||||| |||||||||||||||||||||||||    
T  29598088 atcttttatcaaatctagttcattctactatgagtctctatgggtatctcccacatgaatac 29598027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 386 - 448
Target Start/End: Complemental strand, 21633076 - 21633014
Alignment:
Q  386 atcttttgttaaatctagtttactctactatgagtcactatgggtatctcccacatgaataca 448  Q
    ||||||| | |||| ||| ||| ||||||||||||||||||| ||||||||||||||||||||    
T  21633076 atcttttatcaaatatagattattctactatgagtcactatgtgtatctcccacatgaataca 21633014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 330 - 446
Target Start/End: Complemental strand, 36989621 - 36989502
Alignment:
Q  330 gagttagttactcaaactaatctctatatataggaacactattgtattcatt---cattatcttttgttaaatctagtttactctactatgagtcactat 426  Q
    |||||||||| |||||||||||||||||||||| |||| ||||||| |||||    | |||||||| | ||||||| |||| | || ||| ||||| |||    
T  36989621 gagttagttattcaaactaatctctatatatagaaacattattgtagtcattatggaatatcttttatcaaatctaatttattttattataagtcagtat 36989522  T
Q  427 gggtatctcccacatgaata 446  Q
    | |||||| ||| |||||||    
T  36989521 gagtatcttccagatgaata 36989502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 383 - 447
Target Start/End: Original strand, 3233013 - 3233077
Alignment:
Q  383 attatcttttgttaaatctagtttactctactatgagtcactatgggtatctcccacatgaatac 447  Q
    |||||||||| |||||||||||| | |||||||| | ||  ||||| ||||||||||||||||||    
T  3233013 attatcttttattaaatctagttcattctactataaatctgtatggatatctcccacatgaatac 3233077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 255 - 328
Target Start/End: Original strand, 4880196 - 4880271
Alignment:
Q  255 tattagagtatgaataatcaactatagttagttgat-aggtaaactagaattagtagc-ttggttagaagttagtt 328  Q
    ||||| ||||||||||||| |||||||||||||||| |||| |||||   ||| |||| |||||||||||||||||    
T  4880196 tattaaagtatgaataatcgactatagttagttgataaggttaactaacgttaatagctttggttagaagttagtt 4880271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 269 - 301
Target Start/End: Original strand, 44962282 - 44962314
Alignment:
Q  269 taatcaactatagttagttgataggtaaactag 301  Q
    ||||||||||||||||||||||| |||||||||    
T  44962282 taatcaactatagttagttgataagtaaactag 44962314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 174; Significance: 2e-93; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 255 - 448
Target Start/End: Original strand, 15868377 - 15868570
Alignment:
Q  255 tattagagtatgaataatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctct 354  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  15868377 tattagagtatgaataatcaactatagttagttgataggtaaactagagttaatagcttggttagaagttagttagagttagttactcaaactaatctct 15868476  T
Q  355 atatataggaacactattgtattcattcattatcttttgttaaatctagtttactctactatgagtcactatgggtatctcccacatgaataca 448  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  15868477 atatataggaacactattgtactcattcattatcttttgttaaatctagtttactctcctatgagtcactatgggtatctcccacatgaataca 15868570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 254 - 448
Target Start/End: Original strand, 15866564 - 15866758
Alignment:
Q  254 ttattagagtatgaataatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctc 353  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||| ||||||||||||||||||||||||    
T  15866564 ttattagagtatgaataatcaactatagttagttgataggtaaactagagttaatagcttgggtagaagttagttagagttagttactcaaactaatctc 15866663  T
Q  354 tatatataggaacactattgtattcattcattatcttttgttaaatctagtttactctactatgagtcactatgggtatctcccacatgaataca 448  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  15866664 tatatttaggaacactattgtactcattcattatcttttgttaaatctagtttactctcctatgagtcactatgggtatctcccacatgaataca 15866758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 255 - 448
Target Start/End: Original strand, 33866084 - 33866277
Alignment:
Q  255 tattagagtatgaataatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctct 354  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  33866084 tattagagtattaataatcaactatagttagttgataggtaaactagagttagtagcttggttagaagttagttagagttagttactcagactaatctct 33866183  T
Q  355 atatataggaacactattgtattcattcattatcttttgttaaatctagtttactctactatgagtcactatgggtatctcccacatgaataca 448  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  33866184 atatataggaacactattgtactcattcactatcttttgttaaatctagtttactctcctatgggtcactatgggtatctcccacatgaataca 33866277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 255 - 448
Target Start/End: Original strand, 33869231 - 33869424
Alignment:
Q  255 tattagagtatgaataatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctct 354  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  33869231 tattagagtatgaataatcaactatagttagttgataggtaaactagagttagtagcttggttagaagttagttagagttagttacttaaactaatctct 33869330  T
Q  355 atatataggaacactattgtattcattcattatcttttgttaaatctagtttactctactatgagtcactatgggtatctcccacatgaataca 448  Q
    |||||||||||||||||||||  |||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  33869331 atatataggaacactattgtacgcattcactatcttttgttaaatctagtttactctcctatgagtcactatggatatctcccacatgaataca 33869424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 269 - 392
Target Start/End: Original strand, 5376876 - 5377000
Alignment:
Q  269 taatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctc-tatatataggaaca 367  Q
    ||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  5376876 taatcaactatagttagttgataagtaaactagagttagtagtttggttagaagttagttagagttagttactcaaactaatctcttatatataggaaca 5376975  T
Q  368 ctattgtattcattcattatctttt 392  Q
    |||||||| ||||||| ||||||||    
T  5376976 ctattgtactcattcaatatctttt 5377000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 269 - 392
Target Start/End: Original strand, 5378731 - 5378855
Alignment:
Q  269 taatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctc-tatatataggaaca 367  Q
    ||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  5378731 taatcaactatagttagttgataagtaaactagagttagtagtttggttagaagttagttagagttagttactcaaactaatctcttatatataggaaca 5378830  T
Q  368 ctattgtattcattcattatctttt 392  Q
    |||||||| ||||||| ||||||||    
T  5378831 ctattgtactcattcaatatctttt 5378855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 271 - 392
Target Start/End: Complemental strand, 1088883 - 1088762
Alignment:
Q  271 atcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctctatatataggaacacta 370  Q
    ||||||||||||||||||||| ||||| |||| |||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  1088883 atcaactatagttagttgataagtaaattagagttagtagctttgttagaagttagttagagttagttagtcaaactaatctctatatataggaacacta 1088784  T
Q  371 ttgtattcattcattatctttt 392  Q
    ||||| |||||||| |||||||    
T  1088783 ttgtactcattcatcatctttt 1088762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 269 - 392
Target Start/End: Complemental strand, 19645532 - 19645409
Alignment:
Q  269 taatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctctatatataggaacac 368  Q
    ||||||| ||||||||||||||| |||||||| | |||||||||||||||||| |||||  ||| |||||||||||||||||||||||||||| ||||||    
T  19645532 taatcaattatagttagttgataagtaaactaaagttagtagcttggttagaaattagtcagaggtagttactcaaactaatctctatatataagaacac 19645433  T
Q  369 tattgtattcattcattatctttt 392  Q
    ||||||| ||||||||||||||||    
T  19645432 tattgtactcattcattatctttt 19645409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 254 - 447
Target Start/End: Original strand, 14611068 - 14611259
Alignment:
Q  254 ttattagagtatgaataatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctc 353  Q
    |||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||| ||||  ||||| || ||||||||||| | |||||| |||    
T  14611068 ttattagagtatgaataatcaactatggttagttgataggtaaattagagttagtagcttcgttaagagttatttagagttagttacac-aactaaactc 14611166  T
Q  354 tatatataggaacactattgtattcattcattatcttttgttaaatctagtttactctactatgagtcactatgggtatctcccacatgaatac 447  Q
    ||||||||||||||||  |||||   ||||||||||||| | |||| || || | | | ||||||||| |||||| ||||||||||||||||||    
T  14611167 tatatataggaacactcgtgtatcatttcattatcttttatcaaatata-ttgattatcctatgagtctctatggttatctcccacatgaatac 14611259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 269 - 366
Target Start/End: Complemental strand, 15149277 - 15149180
Alignment:
Q  269 taatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctctatatataggaac 366  Q
    ||||||||||||||||||||||| |||||||||  | ||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||    
T  15149277 taatcaactatagttagttgataagtaaactagggtcagtagcttggttagaagttagttagagttagttactcaaattaatttctatatataggaac 15149180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 255 - 340
Target Start/End: Original strand, 32079895 - 32079980
Alignment:
Q  255 tattagagtatgaataatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttac 340  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||  |||||||| |||||||||||    
T  32079895 tattagagtatgaataatcaactatagttagttgataggtaaactagagttagaagcttggttaagagttagttagagttagttac 32079980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 297 - 375
Target Start/End: Original strand, 9415095 - 9415173
Alignment:
Q  297 actagaattagtagcttggttagaagttagttggagttagttactcaaactaatctctatatataggaacactattgta 375  Q
    |||||| ||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||| |||||||||||||    
T  9415095 actagagttagtagcttggttagaagttagttagagttagttagtgaaactaatctctatatataagaacactattgta 9415173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 321 - 447
Target Start/End: Original strand, 14618975 - 14619099
Alignment:
Q  321 agttagttggagttagttactcaaactaatctctatatataggaacactattgtattcattcattatcttttgttaaatctagtttactctactatgagt 420  Q
    |||||||| ||||||||||| ||| |||| |||||||||||||||||||  |||||   ||||||||||||| | ||||||| || | ||| ||||||||    
T  14618975 agttagttagagttagttacacaa-ctaaactctatatataggaacactcatgtatcatttcattatcttttatcaaatcta-ttgattctcctatgagt 14619072  T
Q  421 cactatgggtatctcccacatgaatac 447  Q
    | |||||| ||||||||||||||||||    
T  14619073 ctctatggttatctcccacatgaatac 14619099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 255 - 328
Target Start/End: Original strand, 14620496 - 14620569
Alignment:
Q  255 tattagagtatgaataatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagtt 328  Q
    |||||||||||||||||||||||||  ||||||||||||||||||| | |||||||||||||||  ||||||||    
T  14620496 tattagagtatgaataatcaactatgattagttgataggtaaactacagttagtagcttggttaagagttagtt 14620569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 269 - 392
Target Start/End: Complemental strand, 28884487 - 28884363
Alignment:
Q  269 taatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctctatatataggaacac 368  Q
    |||||| ||||||||||||||||||| ||||||| |||| ||||| |||   |||| ||| ||||  ||||||  || |||||| |||||| |||||||     
T  28884487 taatcagctatagttagttgataggttaactagagttagaagctttgtttatagttggttagagtcggttacttcaattaatctgtatataaaggaacaa 28884388  T
Q  369 t-attgtattcattcattatctttt 392  Q
    | |||||| ||||||||||||||||    
T  28884387 tcattgtactcattcattatctttt 28884363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 443
Target Start/End: Original strand, 24544733 - 24544791
Alignment:
Q  385 tatcttttgttaaatctagtttactctactatgagtcactatgggtatctcccacatga 443  Q
    |||||||| | |||||||||||||||||||||||||  ||||| ||||||||| |||||    
T  24544733 tatcttttatcaaatctagtttactctactatgagtttctatgagtatctccctcatga 24544791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 92
Target Start/End: Complemental strand, 18367961 - 18367923
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtc 92  Q
    ||||||| ||||||||||||||||| |||||||||||||    
T  18367961 aagcacggacactccttggataaggcgtgtccccgtgtc 18367923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 16488524 - 16488560
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtg 90  Q
    ||||||||||| ||||||||||||| |||||||||||    
T  16488524 aagcacgaacattccttggataaggcgtgtccccgtg 16488560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 174; Significance: 2e-93; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 255 - 448
Target Start/End: Original strand, 3284487 - 3284680
Alignment:
Q  255 tattagagtatgaataatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctct 354  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  3284487 tattagagtatgaataatcaactatagttagttgataggtaaactagagttagtagcttggttagaagttagttagagttagttactcaaactaatctct 3284586  T
Q  355 atatataggaacactattgtattcattcattatcttttgttaaatctagtttactctactatgagtcactatgggtatctcccacatgaataca 448  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  3284587 atatataggaacactattgtactcattcactatcttttgttaaatctagtttactctcctatgagtcactatgggtatctcccacatgaataca 3284680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 255 - 448
Target Start/End: Original strand, 3282786 - 3282979
Alignment:
Q  255 tattagagtatgaataatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctct 354  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  3282786 tattagagtatgaataatcaactatagttagttgataggtaaactagagttagtagcttggttagaagttagttagagttagttactcaaactaatctct 3282885  T
Q  355 atatataggaacactattgtattcattcattatcttttgttaaatctagtttactctactatgagtcactatgggtatctcccacatgaataca 448  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  3282886 atatataggaacactattgtactcattcactatcttttgttaaatctagtttactctcctataagtcactatgggtatctcccacatgaataca 3282979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 255 - 448
Target Start/End: Original strand, 9312014 - 9312207
Alignment:
Q  255 tattagagtatgaataatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctct 354  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  9312014 tattagagtatgaataatcaactatagttagttgataggtaaactagagttagtagcttggttagaagttagttagagttagttactcaaactaatctct 9312113  T
Q  355 atatataggaacactattgtattcattcattatcttttgttaaatctagtttactctactatgagtcactatgggtatctcccacatgaataca 448  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||    
T  9312114 atatataggaacactattgtactcattcattatcttttgttaaatctagtttactctcccatgagtcactatgagtatctcccacatgaataca 9312207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 255 - 448
Target Start/End: Original strand, 9310397 - 9310590
Alignment:
Q  255 tattagagtatgaataatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctct 354  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||| |||    
T  9310397 tattagagtatgaataatcaactatagttagttgataagtaaactagagttagtagcttggttagaagttagttagagttagttactcaaattaatatct 9310496  T
Q  355 atatataggaacactattgtattcattcattatcttttgttaaatctagtttactctactatgagtcactatgggtatctcccacatgaataca 448  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  9310497 atatataggaacactattgtactcattcattatcttttgttaaatctaatttactctcctatgagtcactatgggtatctcccacatgaataca 9310590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 254 - 448
Target Start/End: Original strand, 902061 - 902254
Alignment:
Q  254 ttattagagtatgaataatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctc 353  Q
    |||||| | |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||  ||| |||    
T  902061 ttattataatatgaataatcatctatagttagttgataggtaaactagagttagtagcttggttagaagttagttagagttagttacacaat-taaactc 902159  T
Q  354 tatatataggaacactattgtattcattcattatcttttgttaaatctagtttactctactatgagtcactatgggtatctcccacatgaataca 448  Q
    | ||||||||||||||  |||||   |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  902160 tctatataggaacactcatgtatcatttcattatcttttgttaaatctagtttactctcctatgagtcactatgggtatctcccacatgaataca 902254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 269 - 392
Target Start/End: Original strand, 17449310 - 17449433
Alignment:
Q  269 taatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctctatatataggaacac 368  Q
    ||||||||||||||||||||||| |||||||||  |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  17449310 taatcaactatagttagttgataagtaaactagggttagtagcttcgttagaagttagttagagttagttactcaaactaatctctatatataggaacac 17449409  T
Q  369 tattgtattcattcattatctttt 392  Q
    ||||||| ||||||||||||||||    
T  17449410 tattgtactcattcattatctttt 17449433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 269 - 392
Target Start/End: Complemental strand, 16808811 - 16808688
Alignment:
Q  269 taatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctctatatataggaacac 368  Q
    ||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  16808811 taatcaactatagttagttgataagtaaactagagttagtagtttggttagaagttagttagagttagttactcaaactaatctctatatatatgaacac 16808712  T
Q  369 tattgtattcattcattatctttt 392  Q
    ||||||| |||||||| |||||||    
T  16808711 tattgtactcattcatcatctttt 16808688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 255 - 361
Target Start/End: Complemental strand, 37664801 - 37664695
Alignment:
Q  255 tattagagtatgaataatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctct 354  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  37664801 tattagagtatgaataatcaactatagttagttgataggtaaactagagttagtagcttggttagaagttagttagagttagttattcaaactaatctct 37664702  T
Q  355 atatata 361  Q
    |||||||    
T  37664701 atatata 37664695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 255 - 361
Target Start/End: Complemental strand, 37674523 - 37674417
Alignment:
Q  255 tattagagtatgaataatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctct 354  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  37674523 tattagagtatgaataatcaactatagttagttgataggtaaactagagttagtagcttggttagaagttagttagagttagttattcaaactaatctct 37674424  T
Q  355 atatata 361  Q
    |||||||    
T  37674423 atatata 37674417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 255 - 361
Target Start/End: Original strand, 37702171 - 37702277
Alignment:
Q  255 tattagagtatgaataatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctct 354  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||| ||||||||||||||    
T  37702171 tattagagtatgaataatcaactatagttagttgataggtaaactagagttagtagcttggttagaaattagttagagttagttattcaaactaatctct 37702270  T
Q  355 atatata 361  Q
    |||||||    
T  37702271 atatata 37702277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 255 - 328
Target Start/End: Complemental strand, 5925020 - 5924947
Alignment:
Q  255 tattagagtatgaataatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagtt 328  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||    
T  5925020 tattagagtatgaataatcaactatagttagttgataggtaaattagagttagtagtttggttagaagttagtt 5924947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 316 - 392
Target Start/End: Original strand, 48941646 - 48941722
Alignment:
Q  316 ttagaagttagttggagttagttactcaaactaatctctatatataggaacactattgtattcattcattatctttt 392  Q
    ||||||||||||| ||||| |||||||||||||||||||||| |||  |||||||||||| ||||||| ||||||||    
T  48941646 ttagaagttagttagagttggttactcaaactaatctctatacatataaacactattgtactcattcagtatctttt 48941722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 269 - 320
Target Start/End: Original strand, 48940675 - 48940726
Alignment:
Q  269 taatcaactatagttagttgataggtaaactagaattagtagcttggttaga 320  Q
    ||||||||||||||||||||||| |||||||||| ||||||| |||||||||    
T  48940675 taatcaactatagttagttgataagtaaactagagttagtagtttggttaga 48940726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 308
Target Start/End: Original strand, 36580553 - 36580600
Alignment:
Q  261 agtatgaataatcaactatagttagttgataggtaaactagaattagt 308  Q
    ||||||||||||| ||||||| |||||||||||| ||||||| |||||    
T  36580553 agtatgaataatctactatagatagttgataggttaactagagttagt 36580600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 92
Target Start/End: Original strand, 10577680 - 10577718
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtc 92  Q
    ||||||| ||||||||||||||||| |||||||||||||    
T  10577680 aagcacggacactccttggataaggcgtgtccccgtgtc 10577718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 170; Significance: 5e-91; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 255 - 456
Target Start/End: Original strand, 6211 - 6412
Alignment:
Q  255 tattagagtatgaataatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctct 354  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  6211 tattagagtatgaataatcaactatagttaattgataggtaaactagagttagtagcttggttagaagttagttagagttagttactcaaactaatctct 6310  T
Q  355 atatataggaacactattgtattcattcattatcttttgttaaatctagtttactctactatgagtcactatgggtatctcccacatgaatacatctgtg 454  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| ||    
T  6311 atatataggaacactattgtactcattcactatcttttgttaaatcaagtttactctcctatgagtcactatgggtatctcccacatgaatacatctatg 6410  T
Q  455 ct 456  Q
    ||    
T  6411 ct 6412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 163; Significance: 7e-87; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 254 - 448
Target Start/End: Complemental strand, 39787306 - 39787112
Alignment:
Q  254 ttattagagtatgaataatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctc 353  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  39787306 ttattagagtatgaataatcaactatagttagttgataggtaaactagagttagtagcttggttagaagttagttagagttagttactcaaactaatctc 39787207  T
Q  354 tatatataggaacactattgtattcattcattatcttttgttaaatctagtttactctactatgagtcactatgggtatctcccacatgaataca 448  Q
    ||||||||||||||||||| || ||||||| | ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  39787206 tatatataggaacactattttactcattcactgtcttttgttaaatctagtttactctcctataagtcactatgggtatctcccacatgaataca 39787112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 261 - 392
Target Start/End: Complemental strand, 25076356 - 25076224
Alignment:
Q  261 agtatgaataatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctctatatat 360  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| |||   |||   |||||||| |||| ||| | || |||||||||||| ||||    
T  25076356 agtatgaataatcaactatagttagttgataggttaactagaattagaagccaagtttagagttagttagagtaagtcattccaactaatctctagatat 25076257  T
Q  361 aggaac-actattgtattcattcattatctttt 392  Q
    |||||| || |||||| || ||||| |||||||    
T  25076256 aggaacaacaattgtactctttcatcatctttt 25076224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 261 - 392
Target Start/End: Complemental strand, 25134325 - 25134193
Alignment:
Q  261 agtatgaataatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctctatatat 360  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| |||   |||   |||||||| |||| ||| | || |||||||||||| ||||    
T  25134325 agtatgaataatcaactatagttagttgataggttaactagaattagaagccaagtttagagttagttagagtaagtcattccaactaatctctagatat 25134226  T
Q  361 aggaac-actattgtattcattcattatctttt 392  Q
    |||||| || |||||| || ||||| |||||||    
T  25134225 aggaacaacaattgtactctttcatcatctttt 25134193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 384 - 447
Target Start/End: Original strand, 33689980 - 33690043
Alignment:
Q  384 ttatcttttgttaaatctagtttactctactatgagtcactatgggtatctcccacatgaatac 447  Q
    ||||||||| | ||||||| || |||||| |||||||| |||||||||||||||||||||||||    
T  33689980 ttatcttttatcaaatctaattcactctattatgagtctctatgggtatctcccacatgaatac 33690043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 92
Target Start/End: Original strand, 30098983 - 30099021
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtc 92  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  30098983 aagcacgaacactccttggataaggcgtgtccccgtgtc 30099021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 325 - 369
Target Start/End: Original strand, 6569888 - 6569932
Alignment:
Q  325 agttggagttagttactcaaactaatctctatatataggaacact 369  Q
    |||| |||||||||| || ||||||||||||||||||||||||||    
T  6569888 agttagagttagttagtccaactaatctctatatataggaacact 6569932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 21814386 - 21814350
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtg 90  Q
    ||||||||||| ||||||||||||| |||||||||||    
T  21814386 aagcacgaacattccttggataaggcgtgtccccgtg 21814350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 133; Significance: 6e-69; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 254 - 446
Target Start/End: Original strand, 23985758 - 23985949
Alignment:
Q  254 ttattagagtatgaataatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctc 353  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  23985758 ttattagagtatgaataatcaactatagttagttgataggtaaactagagttagtagcttggttagaagttagttagagttagttattcaaactaatctc 23985857  T
Q  354 tatatataggaacactattgtattcattcattatcttttgttaaatctagtttactctactatgagtcactatgggtatctcccacatgaata 446  Q
    |||||||||||||||||||||| |||||||  ||||||| | ||||||| || | ||| ||||||||| |||||| |||||||||||||||||    
T  23985858 tatatataggaacactattgtactcattcaccatcttttatcaaatcta-ttgattctcctatgagtctctatggttatctcccacatgaata 23985949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 255 - 447
Target Start/End: Complemental strand, 3529393 - 3529202
Alignment:
Q  255 tattagagtatgaataatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctct 354  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  3529393 tattagagtatgaataatcaactgtagttagttgataggtaaactaaagttagtagcttggttagaagttagttagagttagttactcaaactaatctct 3529294  T
Q  355 atatataggaacactattgtattcattcattatcttttgttaaatctagtttactctactatgagtcactatgggtatctcccacatgaatac 447  Q
    ||||||||||||||||||||| |||||||||||||||| | ||||||| || | ||| ||||||||| |||||| ||| | ||||||||||||    
T  3529293 atatataggaacactattgtactcattcattatcttttatcaaatcta-ttgattctcctatgagtctctatggttattttccacatgaatac 3529202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 269 - 392
Target Start/End: Original strand, 7040360 - 7040483
Alignment:
Q  269 taatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctctatatataggaacac 368  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  7040360 taatcaactatagttagttgataagtaaactagagttagtagcttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacac 7040459  T
Q  369 tattgtattcattcattatctttt 392  Q
    ||||||| ||||||||||||||||    
T  7040460 tattgtactcattcattatctttt 7040483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 269 - 392
Target Start/End: Complemental strand, 23564907 - 23564784
Alignment:
Q  269 taatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctctatatataggaacac 368  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  23564907 taatcaactatagttagttgataagtaaactagagttagtagcttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacac 23564808  T
Q  369 tattgtattcattcattatctttt 392  Q
    ||||||| ||||||||||||||||    
T  23564807 tattgtactcattcattatctttt 23564784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 269 - 392
Target Start/End: Complemental strand, 23566581 - 23566458
Alignment:
Q  269 taatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctctatatataggaacac 368  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  23566581 taatcaactatagttagttgataagtaaactagacttagtagcttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacac 23566482  T
Q  369 tattgtattcattcattatctttt 392  Q
    ||||||| ||||||||||||||||    
T  23566481 tattgtactcattcattatctttt 23566458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 269 - 392
Target Start/End: Original strand, 52520600 - 52520723
Alignment:
Q  269 taatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctctatatataggaacac 368  Q
    ||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  52520600 taatcaactatagttagttgataagtaaactagagttagtagtttggttagaagttagttagagttagttactcaaactaatctctatatataggaacac 52520699  T
Q  369 tattgtattcattcattatctttt 392  Q
    ||||||| |||||||| |||||||    
T  52520700 tattgtactcattcatcatctttt 52520723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 269 - 392
Target Start/End: Original strand, 18656107 - 18656230
Alignment:
Q  269 taatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctctatatataggaacac 368  Q
    |||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||    
T  18656107 taatcaactatagttagttgatagctaaactagagttagtagcttagttagaagttagttagagttagttactcaaactaatctctatatataggaaaac 18656206  T
Q  369 tattgtattcattcattatctttt 392  Q
    ||||||| |||||||| |||||||    
T  18656207 tattgtactcattcatcatctttt 18656230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 269 - 392
Target Start/End: Original strand, 52518758 - 52518881
Alignment:
Q  269 taatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctctatatataggaacac 368  Q
    ||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  52518758 taatcaactatagttagttgataagtaaactagagttagtagtttggttagaagttagttagagttagttactcaaactaatctctatatataggaacac 52518857  T
Q  369 tattgtattcattcattatctttt 392  Q
    | ||||| ||| |||| |||||||    
T  52518858 tgttgtactcaatcatcatctttt 52518881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 255 - 369
Target Start/End: Complemental strand, 52545347 - 52545234
Alignment:
Q  255 tattagagtatgaataatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctct 354  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||| | |||||| ||||    
T  52545347 tattagagtatgaataatcaactatagttagttgataggtaaactagagttagtagcttggttagaagttggttagagttagttacac-aactaaactct 52545249  T
Q  355 atatataggaacact 369  Q
    |||||||||||||||    
T  52545248 atatataggaacact 52545234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 296 - 392
Target Start/End: Original strand, 54296454 - 54296550
Alignment:
Q  296 aactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctctatatataggaacactattgtattcattcattatctttt 392  Q
    ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  54296454 aactagagttagtagcttggttagaagttagttagagttagttactcaaactaatctctatatataggaacactattgtactcattcatgatctttt 54296550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 255 - 447
Target Start/End: Original strand, 24807409 - 24807600
Alignment:
Q  255 tattagagtatgaataatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctct 354  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||  ||||||   ||||||||||| | ||||||  |||    
T  24807409 tattagagtatgaataatcaactatagttagttgataggtaaattagagttagaagcttggttaagagttaggaagagttagttacac-aactaaaatct 24807507  T
Q  355 atatataggaacactattgtattcattc-attatcttttgttaaatctagtttactctactatgagtcactatgggtatctcccacatgaatac 447  Q
    |||||||||||||||  |||||   ||| || ||||||| | ||||||| || | ||| ||||||||| |||||| ||||||||||||||||||    
T  24807508 atatataggaacactcatgtatcatttcaatcatcttttatcaaatcta-ttgattctcctatgagtctctatggatatctcccacatgaatac 24807600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 269 - 361
Target Start/End: Complemental strand, 3274672 - 3274580
Alignment:
Q  269 taatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctctatatata 361  Q
    |||||||||||| ||||||||||||||||| ||| ||||| ||||| ||||||||||||| |||||| ||||||||| |||| ||||||||||    
T  3274672 taatcaactataattagttgataggtaaacaagagttagtggcttgattagaagttagttagagttaattactcaaattaatttctatatata 3274580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 309 - 448
Target Start/End: Original strand, 51295202 - 51295341
Alignment:
Q  309 agcttggttagaagttagttggagttagttactcaaactaatctctatatataggaacactattgtattcattc-attatcttttgttaaatctagttta 407  Q
    ||||||||||  |||||||| ||||||||||| ||| |||| |  ||||||||||||||||| || ||   ||| | || ||||| | ||||||||||||    
T  51295202 agcttggttaagagttagttagagttagttacacaa-ctaaacattatatataggaacactaatgcatcatttctactaccttttatcaaatctagttta 51295300  T
Q  408 ctctactatgagtcactatgggtatctcccacatgaataca 448  Q
    ||||| ||||||||||||||| |||||||||||||||||||    
T  51295301 ctctattatgagtcactatggatatctcccacatgaataca 51295341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 386 - 448
Target Start/End: Complemental strand, 5653288 - 5653226
Alignment:
Q  386 atcttttgttaaatctagtttactctactatgagtcactatgggtatctcccacatgaataca 448  Q
    ||||||| | |||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  5653288 atcttttatcaaatctagtttactctcctatgagtcactgtgggtatctcccacatgaataca 5653226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 255 - 319
Target Start/End: Complemental strand, 18395880 - 18395816
Alignment:
Q  255 tattagagtatgaataatcaactatagttagttgataggtaaactagaattagtagcttggttag 319  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| | ||| ||| ||||||||    
T  18395880 tattatagtatgaataatcaactatagttagttgataggtaaactatagttaataggttggttag 18395816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 255 - 302
Target Start/End: Original strand, 18320063 - 18320110
Alignment:
Q  255 tattagagtatgaataatcaactatagttagttgataggtaaactaga 302  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||||    
T  18320063 tattacagtatgaataatcaactatagttaattgataggtaaactaga 18320110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 255 - 302
Target Start/End: Complemental strand, 18398620 - 18398573
Alignment:
Q  255 tattagagtatgaataatcaactatagttagttgataggtaaactaga 302  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||||    
T  18398620 tattacagtatgaataatcaactatagttaattgataggtaaactaga 18398573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 447
Target Start/End: Complemental strand, 18395776 - 18395698
Alignment:
Q  368 ctattgtattcattcattatcttttgttaaatctagtttactctactatgagtcactatgggtatctcccacatgaatac 447  Q
    |||||||| ||||||| |||||||| | | ||||| || ||| |||||||||||  |||| |||||||||||||||||||    
T  18395776 ctattgtactcattcactatcttttatcatatcta-ttcactatactatgagtctatatgagtatctcccacatgaatac 18395698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 92
Target Start/End: Original strand, 5414106 - 5414144
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtc 92  Q
    ||||||| ||||||||||||||||||||||||| |||||    
T  5414106 aagcacggacactccttggataaggtgtgtccctgtgtc 5414144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 115; Significance: 3e-58; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 246 - 392
Target Start/End: Original strand, 58762 - 58908
Alignment:
Q  246 catgatttttattagagtatgaataatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaa 345  Q
    |||||||| ||||||| |||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  58762 catgatttgtattagaatatgaataatcaactatagttagttagtaggtaaactagagttagtagcttggttagaagttagttagagttagttactcaaa 58861  T
Q  346 ctaatctctatatataggaacactattgtattcattcattatctttt 392  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||    
T  58862 ctaatctctatatataggaacactattgtactcattcatcatctttt 58908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 104; Significance: 1e-51; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 269 - 392
Target Start/End: Original strand, 30224229 - 30224352
Alignment:
Q  269 taatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctctatatataggaacac 368  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  30224229 taatcaactatagttagttgataagtaaactagagttagtagcttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacac 30224328  T
Q  369 tattgtattcattcattatctttt 392  Q
    ||||||| ||||||||||||||||    
T  30224329 tattgtactcattcattatctttt 30224352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 269 - 392
Target Start/End: Original strand, 5567425 - 5567548
Alignment:
Q  269 taatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctctatatataggaacac 368  Q
    |||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  5567425 taatcaactatagttagttgatagctaaactagagttagtagcttagttagaagttagttggagttagttactcaaactaatctctatatataggaaaac 5567524  T
Q  369 tattgtattcattcattatctttt 392  Q
    ||||||| |||||||| |||||||    
T  5567525 tattgtactcattcatcatctttt 5567548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 269 - 392
Target Start/End: Complemental strand, 3375655 - 3375532
Alignment:
Q  269 taatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctctatatataggaacac 368  Q
    ||||||||||||||||||||||| |||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |    
T  3375655 taatcaactatagttagttgataagtaaactagggttagtagcttggttagaagttagttagagttagttactcaaactaatctctatatataggaactc 3375556  T
Q  369 tattgtattcattcattatctttt 392  Q
    |||||||  |||||||||||||||    
T  3375555 tattgtacccattcattatctttt 3375532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 269 - 392
Target Start/End: Original strand, 6428739 - 6428862
Alignment:
Q  269 taatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctctatatataggaacac 368  Q
    |||||||||||| |||||||||| |||||||||| |||||| ||| |||| ||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  6428739 taatcaactataattagttgataagtaaactagagttagtaccttagttaaaagttagttagaggtagttactcaaactaatctctatatataggaacac 6428838  T
Q  369 tattgtattcattcattatctttt 392  Q
    ||||||| |||||||| |||||||    
T  6428839 tattgtaatcattcatcatctttt 6428862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 269 - 392
Target Start/End: Original strand, 25249002 - 25249128
Alignment:
Q  269 taatcaactatagttagttgatag---gtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctctatatataggaa 365  Q
    |||||||||||||||| ||||||    |||||||||| |||||||||||||||||||||||||  || ||||||||||||||||||||||||||||||||    
T  25249002 taatcaactatagttaattgataataagtaaactagagttagtagcttggttagaagttagttaaaggtagttactcaaactaatctctatatataggaa 25249101  T
Q  366 cactattgtattcattcattatctttt 392  Q
    |||||||||| |||||||| |||||||    
T  25249102 cactattgtactcattcatgatctttt 25249128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 269 - 384
Target Start/End: Complemental strand, 3379346 - 3379231
Alignment:
Q  269 taatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctctatatataggaacac 368  Q
    |||||||||||||||||||||||| ||||||||| ||||||| || |||||||||||||| |||||||||||||||||||||||||||||  ||||| ||    
T  3379346 taatcaactatagttagttgatagttaaactagagttagtagtttagttagaagttagttagagttagttactcaaactaatctctatattaaggaaaac 3379247  T
Q  369 tattgtattcattcat 384  Q
    ||||||| ||||||||    
T  3379246 tattgtactcattcat 3379231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 269 - 392
Target Start/End: Complemental strand, 31032231 - 31032112
Alignment:
Q  269 taatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctctatatataggaacac 368  Q
    ||||||||||||||||||||||| |||||||||  ||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||     
T  31032231 taatcaactatagttagttgataagtaaactagggttagtagcttggttagaagtta----gagttagttactcaaactaatctctatatataggaacat 31032136  T
Q  369 tattgtattcattcattatctttt 392  Q
    || |  | |||||||| |||||||    
T  31032135 tactacactcattcatgatctttt 31032112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 255 - 339
Target Start/End: Original strand, 14935562 - 14935646
Alignment:
Q  255 tattagagtatgaataatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagtta 339  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| || |||||||    
T  14935562 tattagagtatgaataatcaactatagttagttgataggtaaactagagttagtaacttggttagaagttagttagaattagtta 14935646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 298 - 392
Target Start/End: Complemental strand, 36536035 - 36535941
Alignment:
Q  298 ctagaattagtagcttggttagaagttagttggagttagttactcaaactaatctctatatataggaacactattgtattcattcattatctttt 392  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||| ||||| |||||||| |||||||    
T  36536035 ctagagttagtagcttggttagaagttagttagagttagttactcaaactaatctctatatatagcaatactgttgtactcattcatcatctttt 36535941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 92
Target Start/End: Original strand, 34450966 - 34451004
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtc 92  Q
    ||||||| ||||||||||||||||| |||||||||||||    
T  34450966 aagcacggacactccttggataaggcgtgtccccgtgtc 34451004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 302
Target Start/End: Original strand, 4676048 - 4676083
Alignment:
Q  266 gaataatcaactatagttagttgataggtaaactaga 302  Q
    ||||||||||||||||||||||||| |||||||||||    
T  4676048 gaataatcaactatagttagttgat-ggtaaactaga 4676083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 104; Significance: 1e-51; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 269 - 392
Target Start/End: Original strand, 29758119 - 29758242
Alignment:
Q  269 taatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctctatatataggaacac 368  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  29758119 taatcaactatagttagttgataagtaaactagagttagtagcttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacac 29758218  T
Q  369 tattgtattcattcattatctttt 392  Q
    ||||||| ||||||||||||||||    
T  29758219 tattgtactcattcattatctttt 29758242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 386 - 447
Target Start/End: Original strand, 20957729 - 20957790
Alignment:
Q  386 atcttttgttaaatctagtttactctactatgagtcactatgggtatctcccacatgaatac 447  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20957729 atcttttgtcaaatctagtttactctactatgagtcactatgggtatctcccacatgaatac 20957790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 386 - 446
Target Start/End: Original strand, 20957557 - 20957617
Alignment:
Q  386 atcttttgttaaatctagtttactctactatgagtcactatgggtatctcccacatgaata 446  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20957557 atcttttgtcaaatctagtttactctactatgagtcactatgggtatctcccacatgaata 20957617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 320
Target Start/End: Original strand, 18739664 - 18739722
Alignment:
Q  262 gtatgaataatcaactatagttagttgataggtaaactagaattagtagcttggttaga 320  Q
    |||||| ||||||| ||||||||||||||| || ||||||| |||||||  ||||||||    
T  18739664 gtatgattaatcaattatagttagttgatacgttaactagagttagtagtctggttaga 18739722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 392
Target Start/End: Complemental strand, 20516103 - 20516053
Alignment:
Q  342 caaactaatctctatatataggaacactattgtattcattcattatctttt 392  Q
    ||||||||| | |||||||| ||||||||||||| ||||||||||| ||||    
T  20516103 caaactaatttttatatataagaacactattgtactcattcattatttttt 20516053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 92
Target Start/End: Complemental strand, 24009409 - 24009371
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtc 92  Q
    ||||||| ||||||||||||||||| |||||||||||||    
T  24009409 aagcacggacactccttggataaggcgtgtccccgtgtc 24009371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 4e-45; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 269 - 392
Target Start/End: Complemental strand, 17403015 - 17402891
Alignment:
Q  269 taatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctc-tatatataggaaca 367  Q
    ||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  17403015 taatcaactatagttagttgataagtaaactagagttagtagtttggttagaagttagttagagttagttactcaaactaatctcttatatataggaaca 17402916  T
Q  368 ctattgtattcattcattatctttt 392  Q
    |||||||| ||||||| ||||||||    
T  17402915 ctattgtactcattcaatatctttt 17402891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 277 - 443
Target Start/End: Original strand, 6789627 - 6789791
Alignment:
Q  277 tatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctctatatataggaacactattgtat 376  Q
    |||||||||| |||| || ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||     
T  6789627 tatagttagtggataagtgaactagagttagtagcttggttagaagttagttagagttagttactcaaactaatctctatatataggaatactattgtac 6789726  T
Q  377 tcattcattatcttttgttaaatctagtttactctactatgagtcactatgggtatctcccacatga 443  Q
    ||||||| |||||||| || |||||| || | ||||| ||||||  ||||| |||||||||||||||    
T  6789727 tcattcactatctttt-ttcaatcta-ttcattctacaatgagtttctatgagtatctcccacatga 6789791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 314 - 392
Target Start/End: Original strand, 1140045 - 1140123
Alignment:
Q  314 ggttagaagttagttggagttagttactcaaactaatctctatatataggaacactattgtattcattcattatctttt 392  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  1140045 ggttagaagttagttagagttagttactcaaactaatctctatatataggaacactattgtactcattcatcatctttt 1140123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 269 - 369
Target Start/End: Original strand, 20302625 - 20302725
Alignment:
Q  269 taatcaactatagtt-agttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctctatatataggaaca 367  Q
    |||| |||||||||| |||||| |||| ||||||| ||||||| ||||||| |||| ||||  |||| |||| ||||||||||||||||||||| |||||    
T  20302625 taataaactatagtttagttgaaaggttaactagacttagtagattggtta-aagtaagttatagttggttattcaaactaatctctatatataagaaca 20302723  T
Q  368 ct 369  Q
    ||    
T  20302724 ct 20302725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 269 - 361
Target Start/End: Original strand, 20327167 - 20327259
Alignment:
Q  269 taatcaactatagtt-agttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctctatatata 361  Q
    |||| |||||||||| |||||| |||| ||||||| ||||||||||||||| |||| ||||  |||| ||||||||||||||||||| ||||||    
T  20327167 taataaactatagtttagttgaaaggttaactagacttagtagcttggtta-aagtaagttatagttggttactcaaactaatctctctatata 20327259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 125 - 165
Target Start/End: Original strand, 46299764 - 46299804
Alignment:
Q  125 tgtacgagtttgccgcgtgaaataactactcatactggccc 165  Q
    |||||||||||||||||||||||||| ||||||||| ||||    
T  46299764 tgtacgagtttgccgcgtgaaataaccactcatacttgccc 46299804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 54
Target Start/End: Original strand, 46299717 - 46299747
Alignment:
Q  24 tgcatgtctgttctgcaacactgtgtagcta 54  Q
    |||||||||||||||||||||||||||||||    
T  46299717 tgcatgtctgttctgcaacactgtgtagcta 46299747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 446
Target Start/End: Complemental strand, 9032797 - 9032760
Alignment:
Q  409 tctactatgagtcactatgggtatctcccacatgaata 446  Q
    ||||||||||||  ||||||||||||||||||||||||    
T  9032797 tctactatgagtttctatgggtatctcccacatgaata 9032760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 292
Target Start/End: Complemental strand, 17579321 - 17579280
Alignment:
Q  251 tttttattagagtatgaataatcaactatagttagttgatag 292  Q
    ||||||||| |  |||||||||||||||||||||||||||||    
T  17579321 tttttattacaagatgaataatcaactatagttagttgatag 17579280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 369
Target Start/End: Original strand, 41874441 - 41874497
Alignment:
Q  312 ttggttagaagttagttggagttagttactcaaactaatctctatatataggaacact 369  Q
    |||||||  |||||||| ||||||||||| ||| |||| |||||||||||||||||||    
T  41874441 ttggttaagagttagttagagttagttacacaa-ctaaactctatatataggaacact 41874497  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 269 - 301
Target Start/End: Original strand, 1140012 - 1140044
Alignment:
Q  269 taatcaactatagttagttgataggtaaactag 301  Q
    ||||||||||||||||||||||| |||||||||    
T  1140012 taatcaactatagttagttgataagtaaactag 1140044  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 188 - 216
Target Start/End: Original strand, 46300108 - 46300136
Alignment:
Q  188 atcattaatgaatagttattgaattttaa 216  Q
    |||||||||||||||||||||||||||||    
T  46300108 atcattaatgaatagttattgaattttaa 46300136  T

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Target: scaffold0006 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 254 - 369
Target Start/End: Original strand, 39129 - 39243
Alignment:
Q  254 ttattagagtatgaataatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctc 353  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||  |||||||||| | |||||| |||    
T  39129 ttattagagtatgaataatcaactatagttagttgataagtaaactagagttagtagcttggttagaagttagttaaagttagttacac-aactaaactc 39227  T
Q  354 tatatataggaacact 369  Q
    ||||||||||||||||    
T  39228 tatatataggaacact 39243  T

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