View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4043_low_5 (Length: 444)
Name: NF4043_low_5
Description: NF4043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4043_low_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 36524052 - 36523712
Alignment:
| Q |
1 |
ttcaacaacaatttgacttaacacctttagaagcttcttcgatgtagatatactgtttttagcttccttaagacggttcttgactccaaccttacattta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36524052 |
ttcaacaacaatttgacttaacacctttagaagcttcttcgatgtagatatactgcttttagcttccttaagacggttcttgactccaaccttacattta |
36523953 |
T |
|
| Q |
101 |
ccacaattcttcttgtgttttggcttattgctaaccttctgcatttcaacatagtttaacttgatccttctcaaccgtgaccaaaataaataagtataga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36523952 |
ccacaattcttcttgtgttttggcttattgctaaccttctgcatttcaacatagtttaacttgatccttctcaaccgtgaccaaaataaataagtataga |
36523853 |
T |
|
| Q |
201 |
tgaaatcataatataatatgtattattattcttgatagaagt--cattgataagataaaagtaaaatgggaatgaactgcatcaatgcatgcataaggtt |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || || | ||| |||| | ||||||||||||| ||||||| ||||||||| |
|
|
| T |
36523852 |
tgaaatcataatataatatgtattattattcttgatagaagtaaaatggaaattatattgataaagagagaatgaactgcattaatgcatacataaggtt |
36523753 |
T |
|
| Q |
299 |
tatatggtcaataagaagaacaacaaacttgtgtaacaaac |
339 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
36523752 |
tatatggtcaataagaagaacaactaacttgtgtaacaaac |
36523712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 266
Target Start/End: Complemental strand, 484018 - 483979
Alignment:
| Q |
227 |
tattcttgatagaagtcattgataagataaaagtaaaatg |
266 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
484018 |
tattcttaatagaagtcattgataagagaaaagtaaaatg |
483979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 261
Target Start/End: Complemental strand, 34239826 - 34239792
Alignment:
| Q |
227 |
tattcttgatagaagtcattgataagataaaagta |
261 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |
|
|
| T |
34239826 |
tattcttaatagaagtcattgataagataaaagta |
34239792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 266
Target Start/End: Complemental strand, 35905357 - 35905318
Alignment:
| Q |
226 |
ttattcttgatagaagtcattgataagataaaagtaaaatg |
266 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
35905357 |
ttattcttgatagaagtctttgataaga-aaaagtaaaatg |
35905318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University