View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4043_low_9 (Length: 326)
Name: NF4043_low_9
Description: NF4043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4043_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 22 - 311
Target Start/End: Original strand, 7666090 - 7666379
Alignment:
| Q |
22 |
cttagatgaacctcttttactacatgattttttcataaaattcgtatctcttttctcttgattagtactactagtaatactattactactacttacttga |
121 |
Q |
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| T |
7666090 |
cttagatgaacctcttttactacatgattttttcataaaattcatatctcttttctcttgattagtactactagtaatactattactactacttacttga |
7666189 |
T |
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| Q |
122 |
acttcaaaactaccactgtcattaatattttctctttcatatttcttaccaataatatcatcaaatttaccctccnnnnnnnnnnnncttgatttgataa |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||| |
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| T |
7666190 |
acttcaaaactaccactgtcattaatattttctctttcatatttctcaccaataatatcattaaatttaccctcctttttcttttttcttgatttgataa |
7666289 |
T |
|
| Q |
222 |
tcaaaaatatagctagtgaaattattactacacttgttataacaataccaataatctgcaatgacttatgcttactgttatcaggcacag |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7666290 |
tcaaaaatatagctagtgaaattattactacacttgttataacaataccaataatctgcaatgacttatgcttactgttatcaggcacag |
7666379 |
T |
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