View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4044_high_15 (Length: 309)

Name: NF4044_high_15
Description: NF4044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4044_high_15
NF4044_high_15
[»] chr6 (6 HSPs)
chr6 (1-289)||(4382815-4383103)
chr6 (43-87)||(2468480-2468524)
chr6 (35-93)||(5581013-5581072)
chr6 (32-78)||(34406427-34406473)
chr6 (28-77)||(20597120-20597169)
chr6 (17-93)||(10666621-10666697)
[»] chr7 (3 HSPs)
chr7 (28-87)||(10692494-10692553)
chr7 (32-73)||(43434511-43434552)
chr7 (17-80)||(43395503-43395566)
[»] chr5 (2 HSPs)
chr5 (26-83)||(34806157-34806214)
chr5 (27-77)||(34166115-34166165)
[»] chr2 (3 HSPs)
chr2 (17-78)||(30289792-30289853)
chr2 (55-88)||(22877112-22877145)
chr2 (43-87)||(31095151-31095195)
[»] chr8 (9 HSPs)
chr8 (33-88)||(10440371-10440426)
chr8 (28-77)||(30585118-30585167)
chr8 (29-88)||(10265958-10266016)
chr8 (25-87)||(30629369-30629431)
chr8 (6-87)||(30920983-30921064)
chr8 (33-82)||(11203239-11203288)
chr8 (27-88)||(16330973-16331034)
chr8 (17-77)||(16852057-16852117)
chr8 (43-83)||(35623931-35623971)
[»] chr3 (2 HSPs)
chr3 (43-81)||(28286907-28286945)
chr3 (26-76)||(27020422-27020472)
[»] chr4 (5 HSPs)
chr4 (27-84)||(9018880-9018937)
chr4 (43-87)||(27131680-27131724)
chr4 (17-88)||(7276729-7276800)
chr4 (33-87)||(1678672-1678726)
chr4 (29-94)||(5032776-5032841)
[»] chr1 (2 HSPs)
chr1 (17-88)||(3523373-3523443)
chr1 (35-88)||(26462652-26462704)


Alignment Details
Target: chr6 (Bit Score: 281; Significance: 1e-157; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 4382815 - 4383103
Alignment:
Q  1 ataagacaccggaagaacacgacaatgacatgtagacaccgataataattaaagaaaatgaaagtaattgaatgtaactacatgtgtctatgtccgaacc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  4382815 ataagacaccggaagaacacgacaatgacatgtagacaccgataataattaaagaaaatgaaagtaattgaatttaactacatgtgtctatgtctgaacc 4382914  T
Q  101 agacgcgtcactgatttgaagtgtcagtgctatatagaaaatgtgttttctggtaattatgagaattggaacaactttcaacagcttaatccttctttgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4382915 agacgcgtcactgatttgaagtgtcagtgctatatagaaaatgtgttttctggtaattatgagaattggaacaactttcaacagcttaatccttctttgt 4383014  T
Q  201 agatgttttagttgattaaaccgacaaactatgcttggagaaaaatcatgttttatgtttcaatgactgagaagtgttcatgatgtaat 289  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4383015 agatgttttagttgattaaaccgacaaactatgcttggagaaaaatcatgttttatgtttcaatgactgagaagtgttcatgatgtaat 4383103  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 87
Target Start/End: Complemental strand, 2468524 - 2468480
Alignment:
Q  43 taataattaaagaaaatgaaagtaattgaatgtaactacatgtgt 87  Q
    |||||||| ||||||||| ||||||||||||||||| ||||||||    
T  2468524 taataatttaagaaaatggaagtaattgaatgtaaccacatgtgt 2468480  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 35 - 93
Target Start/End: Original strand, 5581013 - 5581072
Alignment:
Q  35 gacaccgataataatt-aaagaaaatgaaagtaattgaatgtaactacatgtgtctatgt 93  Q
    |||| ||||||||||| ||||||||| ||||| ||||||||||| |||||||||| ||||    
T  5581013 gacatcgataataatttaaagaaaataaaagtgattgaatgtaattacatgtgtcgatgt 5581072  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 78
Target Start/End: Original strand, 34406427 - 34406473
Alignment:
Q  32 gtagacaccgataataattaaagaaaatgaaagtaattgaatgtaac 78  Q
    ||||||||| || |||||| |||||||||||||| ||||||||||||    
T  34406427 gtagacacctatcataatttaagaaaatgaaagtgattgaatgtaac 34406473  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 77
Target Start/End: Original strand, 20597120 - 20597169
Alignment:
Q  28 acatgtagacaccgataataattaaagaaaatgaaagtaattgaatgtaa 77  Q
    |||||||||||||||| ||||||| |||||||| |||| ||||| |||||    
T  20597120 acatgtagacaccgatgataattatagaaaatggaagtgattgagtgtaa 20597169  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 93
Target Start/End: Complemental strand, 10666697 - 10666621
Alignment:
Q  17 acacgacaatgacatgtagacaccgataataattaaagaaaatgaaagtaattgaatgtaactacatgtgtctatgt 93  Q
    |||||||| ||| || |||||||  |||||||||  |||||||  ||||||||||||| || | |||||||||||||    
T  10666697 acacgacattgaaatatagacactaataataatttgagaaaatagaagtaattgaatgaaatttcatgtgtctatgt 10666621  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 87
Target Start/End: Original strand, 10692494 - 10692553
Alignment:
Q  28 acatgtagacaccgataataattaaagaaaatgaaagtaattgaatgtaactacatgtgt 87  Q
    |||||||||||| |||||||||||||||||||  |||||||| |||||||||| ||||||    
T  10692494 acatgtagacactgataataattaaagaaaattgaagtaatttaatgtaactatatgtgt 10692553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 73
Target Start/End: Original strand, 43434511 - 43434552
Alignment:
Q  32 gtagacaccgataataattaaagaaaatgaaagtaattgaat 73  Q
    ||||||||||||||||||| |||||||||||||| |||||||    
T  43434511 gtagacaccgataataatttaagaaaatgaaagtgattgaat 43434552  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 43395503 - 43395566
Alignment:
Q  17 acacgacaatgacatgtagacaccgataataattaaagaaaatgaaagtaattgaatgtaacta 80  Q
    |||| ||||||||| ||||||| ||||||||||| || ||||| ||||| |||||||| |||||    
T  43395503 acacaacaatgacacgtagacatcgataataatttaataaaataaaagtgattgaatgcaacta 43395566  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 83
Target Start/End: Original strand, 34806157 - 34806214
Alignment:
Q  26 tgacatgtagacaccgataataattaaagaaaatgaaagtaattgaatgtaactacat 83  Q
    ||||| ||||||||||||||||||| ||||||||| || || ||||||||||||||||    
T  34806157 tgacacgtagacaccgataataatttaagaaaatggaattacttgaatgtaactacat 34806214  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 34166115 - 34166165
Alignment:
Q  27 gacatgtagacaccgataataattaaagaaaatgaaagtaattgaatgtaa 77  Q
    |||||||||||| | ||||||||| |||||||||||| | |||||||||||    
T  34166115 gacatgtagacatcaataataatttaagaaaatgaaattgattgaatgtaa 34166165  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 30289792 - 30289853
Alignment:
Q  17 acacgacaatgacatgtagacaccgataataattaaagaaaatgaaagtaattgaatgtaac 78  Q
    |||||||| |||||||||||||| | |||||||| |||||||||  ||||||||||||||||    
T  30289792 acacgacactgacatgtagacactggtaataatttaagaaaatgtgagtaattgaatgtaac 30289853  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 88
Target Start/End: Original strand, 22877112 - 22877145
Alignment:
Q  55 aaaatgaaagtaattgaatgtaactacatgtgtc 88  Q
    |||||||||||||||||||||||| |||||||||    
T  22877112 aaaatgaaagtaattgaatgtaaccacatgtgtc 22877145  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 87
Target Start/End: Original strand, 31095151 - 31095195
Alignment:
Q  43 taataattaaagaaaatgaaagtaattgaatgtaactacatgtgt 87  Q
    ||||||||  |||||||| |||||||||||| |||||||||||||    
T  31095151 taataatttgagaaaatggaagtaattgaatataactacatgtgt 31095195  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 10440371 - 10440426
Alignment:
Q  33 tagacaccgataataattaaagaaaatgaaagtaattgaatgtaactacatgtgtc 88  Q
    |||||| ||||||||||| |||||||| ||||| ||||||||| ||||||||||||    
T  10440371 tagacatcgataataatttaagaaaataaaagtgattgaatgttactacatgtgtc 10440426  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 77
Target Start/End: Complemental strand, 30585167 - 30585118
Alignment:
Q  28 acatgtagacaccgataataattaaagaaaatgaaagtaattgaatgtaa 77  Q
    ||||||||||||  ||||||||| |||||||||||||| |||||||||||    
T  30585167 acatgtagacactaataataatttaagaaaatgaaagtgattgaatgtaa 30585118  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 88
Target Start/End: Original strand, 10265958 - 10266016
Alignment:
Q  29 catgtagacaccgataataattaaagaaaatgaaagtaattgaatgtaactacatgtgtc 88  Q
    |||||||||||||||| ||||| || ||||||||||| |||||||||||| |||| ||||    
T  10265958 catgtagacaccgatagtaatttaa-aaaatgaaagtgattgaatgtaaccacatatgtc 10266016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 30629369 - 30629431
Alignment:
Q  25 atgacatgtagacaccgataataattaaagaaaatgaaagtaattgaatgtaactacatgtgt 87  Q
    ||||||||||||||||| ||||| || |  ||||||||||| |||||||||||  ||||||||    
T  30629369 atgacatgtagacaccggtaatactttataaaaatgaaagtgattgaatgtaaacacatgtgt 30629431  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 87
Target Start/End: Original strand, 30920983 - 30921064
Alignment:
Q  6 acaccggaagaacac-gacaatgacatgtagacaccgataataattaaagaaaatgaaagtaattgaatgtaactacatgtgt 87  Q
    ||||||||| ||||| |||| | |||||||||||||| ||||||||  | ||||||||||| |||||||||||  ||||||||    
T  30920983 acaccggaacaacactgacattaacatgtagacaccgctaataatttta-aaaatgaaagtgattgaatgtaagcacatgtgt 30921064  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 11203239 - 11203288
Alignment:
Q  33 tagacaccgataataattaaagaaaatgaaagtaattgaatgtaactaca 82  Q
    ||||||||| ||||| || ||||||||| ||||||| |||||||||||||    
T  11203239 tagacaccggtaatagtttaagaaaatggaagtaatagaatgtaactaca 11203288  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 16330973 - 16331034
Alignment:
Q  27 gacatgtagacaccgataataattaaagaaaatgaaagtaattgaatgtaactacatgtgtc 88  Q
    |||||||||||||   |||||||| |||||||||||| | ||| |||||||| |||||||||    
T  16330973 gacatgtagacactagtaataatttaagaaaatgaaaatgattaaatgtaaccacatgtgtc 16331034  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 16852057 - 16852117
Alignment:
Q  17 acacgacaatgacatgtagacaccgataataattaaagaaaatgaaagtaattgaatgtaa 77  Q
    |||||||| ||| | |||||||| || ||||||| ||||||||| |||| |||||||||||    
T  16852057 acacgacattgatacgtagacactgacaataatttaagaaaatgtaagtgattgaatgtaa 16852117  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 83
Target Start/End: Original strand, 35623931 - 35623971
Alignment:
Q  43 taataattaaagaaaatgaaagtaattgaatgtaactacat 83  Q
    ||||||||||| ||||| |||||||||||||| ||||||||    
T  35623931 taataattaaaaaaaattaaagtaattgaatgaaactacat 35623971  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 81
Target Start/End: Original strand, 28286907 - 28286945
Alignment:
Q  43 taataattaaagaaaatgaaagtaattgaatgtaactac 81  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  28286907 taataatttaagaaaatgaaagtaattgaatgtaactac 28286945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 27020422 - 27020472
Alignment:
Q  26 tgacatgtagacaccgataataattaaagaaaatgaaagtaattgaatgta 76  Q
    ||||||||| |||||| ||||| ||  ||||||||||||||||||||||||    
T  27020422 tgacatgtacacaccggtaatatttttagaaaatgaaagtaattgaatgta 27020472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 84
Target Start/End: Complemental strand, 9018937 - 9018880
Alignment:
Q  27 gacatgtagacaccgataataattaaagaaaatgaaagtaattgaatgtaactacatg 84  Q
    ||||||||||||||  || |||||  |||||||||||||||||||||||||| |||||    
T  9018937 gacatgtagacaccagtagtaatttgagaaaatgaaagtaattgaatgtaaccacatg 9018880  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 87
Target Start/End: Complemental strand, 27131724 - 27131680
Alignment:
Q  43 taataattaaagaaaatgaaagtaattgaatgtaactacatgtgt 87  Q
    |||||||| ||||||||| ||||||||||||||||| ||||||||    
T  27131724 taataatttaagaaaatggaagtaattgaatgtaaccacatgtgt 27131680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 7276729 - 7276800
Alignment:
Q  17 acacgacaatgacatgtagacaccgataataattaaagaaaatgaaagtaattgaatgtaactacatgtgtc 88  Q
    |||||| | ||||||| |||||| |||||||| | || | ||||||||||||| |||||||| |||||||||    
T  7276729 acacgatactgacatgcagacactgataataacttaaaagaatgaaagtaattaaatgtaacaacatgtgtc 7276800  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 87
Target Start/End: Original strand, 1678672 - 1678726
Alignment:
Q  33 tagacaccgataataattaaagaaaatgaaagtaattgaatgtaactacatgtgt 87  Q
    |||| |||| ||||||||  ||||||||||||| ||| |||||||||||||||||    
T  1678672 tagataccgctaataatttgagaaaatgaaagtgattaaatgtaactacatgtgt 1678726  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 94
Target Start/End: Original strand, 5032776 - 5032841
Alignment:
Q  29 catgtagacaccgataataattaaagaaaatgaaagtaattgaatgtaactacatgtgtctatgtc 94  Q
    |||||||| ||| |||||||||  ||||||||||| | || ||||||||||| ||||||| |||||    
T  5032776 catgtagaaaccaataataatttcagaaaatgaaaatgatagaatgtaactatatgtgtcgatgtc 5032841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 3523373 - 3523443
Alignment:
Q  17 acacgacaatgacatgtagacaccgataataattaaagaaaatgaaagtaattgaatgtaactacatgtgtc 88  Q
    |||||||| ||||| |||||||||||||||||||  | |||||  |||| |||||||||||| |||||||||    
T  3523373 acacgacactgacacgtagacaccgataataatttgataaaatagaagtgattgaatgtaac-acatgtgtc 3523443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 88
Target Start/End: Complemental strand, 26462704 - 26462652
Alignment:
Q  35 gacaccgataataattaaagaaaatgaaagtaattgaatgtaactacatgtgtc 88  Q
    ||||| |||||||||| |||||||||||| |||||||||||||  |||||||||    
T  26462704 gacactgataataatttaagaaaatgaaa-taattgaatgtaatcacatgtgtc 26462652  T

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