View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4044_high_18 (Length: 271)
Name: NF4044_high_18
Description: NF4044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4044_high_18 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 17 - 265
Target Start/End: Complemental strand, 19747470 - 19747222
Alignment:
| Q |
17 |
actttgaactatcctatcagtagtgtagagtccttccccgtgagtcgtttactcgagaatccttcaaatactgtttttggtgacaatttacatgattcga |
116 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| || |
|
|
| T |
19747470 |
actttgaaatatcctatcagtagtgtagagtccttccccgtgagtcgtttactcgagaatccttcaatcactgtttttggtgacaatttccatgatttga |
19747371 |
T |
|
| Q |
117 |
atgatacttgtcaggttgttggttcctgcaatggattgttttgcttgattttccattctctccataggaagtatacaaaatactggttttgtttatggaa |
216 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19747370 |
atgacacttgtcaggttattggttcctgcaatggattgttttgcttgattttccattctctccataggaagtatacaaaatactggttttgtttatggaa |
19747271 |
T |
|
| Q |
217 |
tcctgccacgagaacaatatctgaagaattagggactttcctatgctac |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
19747270 |
tcctgccacgagaacaatatctgaagaattagggactttccgatgctac |
19747222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 29 - 176
Target Start/End: Original strand, 23086043 - 23086190
Alignment:
| Q |
29 |
cctatcagtagtgtagagtccttccccgtgagtcgtttactcgagaatccttcaaatactgtttttggtgacaatttacatgattcgaatgatacttgtc |
128 |
Q |
| |
|
|||||||||| ||| || |||||| | ||||||||||||||||||||| |||| | | ||||| |||||||||| |||| || | || || |||| |
|
|
| T |
23086043 |
cctatcagtaatgtcgaatccttctctgtgagtcgtttactcgagaattcttcgatcattgtttccggtgacaattgccatggatcagaggacacatgtc |
23086142 |
T |
|
| Q |
129 |
aggttgttggttcctgcaatggattgttttgcttgattttccattctc |
176 |
Q |
| |
|
| |||||||||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
23086143 |
atgttgttggttcctgcaatggattgctttgcttgcttttccattctc |
23086190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 166
Target Start/End: Complemental strand, 10554203 - 10554167
Alignment:
| Q |
130 |
ggttgttggttcctgcaatggattgttttgcttgatt |
166 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
10554203 |
ggttgttggttcatgcaatggattgttgtgcttgatt |
10554167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 166
Target Start/End: Complemental strand, 10571933 - 10571897
Alignment:
| Q |
130 |
ggttgttggttcctgcaatggattgttttgcttgatt |
166 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
10571933 |
ggttgttggttcatgcaatggattgttgtgcttgatt |
10571897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University