View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4044_high_2 (Length: 417)
Name: NF4044_high_2
Description: NF4044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4044_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 17 - 409
Target Start/End: Original strand, 55103390 - 55103782
Alignment:
| Q |
17 |
aaaggcaacaacttacagcttcaatagcactaaactttcgactcttgggatccaaggtaatttcttacattccattcaatgatatttttgatgtatgtag |
116 |
Q |
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| T |
55103390 |
aaaggcaacaacttacagcttcaatagcactaaactttcgactcttgggatccaaggtaatttcttacattccattcaatgatatttttgatgtatgtag |
55103489 |
T |
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| Q |
117 |
tctgtttaaactattgaataaattaattgatcaaatagtactggtagtattttatatatagtgattaagagaatatttaatttgaggcagatggagtagc |
216 |
Q |
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| T |
55103490 |
tctgtttaaaatattgaataaattgattgataaaatagtactggtagtattttatatatagtgattaagagattatttaatttgaggcagatggagtagc |
55103589 |
T |
|
| Q |
217 |
tcttttctgggggatagattactacaacaatgaattattgcattctgataaggaacgagttggttctgtgacaacagagatactattggaaaaagatgag |
316 |
Q |
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| T |
55103590 |
tcttttctgggggatagattactacaacaatgaattattgcattctgataaggaccgagttggttctgtgacaacagagatactattggaaaaagatgag |
55103689 |
T |
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| Q |
317 |
aattccttcacattgcaaaacggatggacatttccaagaagaatatatttcaacggtgaaaactgtgacatgcctttacctgacacattccct |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55103690 |
aattccttcacattgcaaaacggatggacatttccaagaagaatatatttcaacggtgaaaactgtgacatgcctttacctgacacattccct |
55103782 |
T |
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