View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4044_high_20 (Length: 255)
Name: NF4044_high_20
Description: NF4044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4044_high_20 |
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Alignment Details
Target: chr6 (Bit Score: 139; Significance: 8e-73; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 91 - 241
Target Start/End: Complemental strand, 4382721 - 4382571
Alignment:
| Q |
91 |
ggcgggacgttgggatttttcatgtacaagaaaataccttagaatcatcatcttagccctcgtacgcctcttctgaatcagacaatggttaaagggagca |
190 |
Q |
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| T |
4382721 |
ggcgggacgttgggatttttcatgtacaagaaaataccttagaatcatcatcttagccctcgtacgcctcttctgaatcagacaatggttaatgggagca |
4382622 |
T |
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| Q |
191 |
gatccaaaccatgtgaccattgaggcacacatgataatcgacgcattcatc |
241 |
Q |
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| T |
4382621 |
gatccaaaccatgtgaccattgaggcacacatgacaattgacgcattcatc |
4382571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 93 - 238
Target Start/End: Complemental strand, 4374485 - 4374338
Alignment:
| Q |
93 |
cgggacgttgggatttttcatgtacaagaaaataccttagaatcatca---tcttagccctcgtacgcctcttctgaatcagacaatggttaaagggagc |
189 |
Q |
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| T |
4374485 |
cgggacgttgggatttta-atgtacaagaaaatacctttgaatcaccaatatcttacttctcatacgcctcttttgaatcagacattgataaaaggaagc |
4374387 |
T |
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| Q |
190 |
agatccaaaccatgtgaccattgaggcacacatgataatcgacgcattc |
238 |
Q |
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| T |
4374386 |
agatccaaaccatgtgaccattaaggcacacatgataattgacgcattc |
4374338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 3 - 64
Target Start/End: Complemental strand, 4382809 - 4382748
Alignment:
| Q |
3 |
tatctgtgttggtgtttcatagcacatttccagccttaattttgatatttcatagaaattgt |
64 |
Q |
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| T |
4382809 |
tatctgtgttggtgtttcatagcacatttccagccttaattttgatatttcatagaaattgt |
4382748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 64
Target Start/End: Complemental strand, 4374575 - 4374514
Alignment:
| Q |
3 |
tatctgtgttggtgtttcatagcacatttccagccttaattttgatatttcatagaaattgt |
64 |
Q |
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| T |
4374575 |
tatctgtgttagtgcttcatagcacatttccagccttaattttgagttttcatagaaattgt |
4374514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 238
Target Start/End: Complemental strand, 4355867 - 4355789
Alignment:
| Q |
160 |
cttctgaatcagacaatggttaaagggagcagatccaaaccatgtgaccattgaggcacacatgataatcgacgcattc |
238 |
Q |
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| T |
4355867 |
cttctgaatcagacaaaggcaacagagtgcagattccaaccatgtgtccattaaggcacacatgataatcaacacattc |
4355789 |
T |
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