View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4044_high_23 (Length: 233)
Name: NF4044_high_23
Description: NF4044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4044_high_23 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 12 - 217
Target Start/End: Original strand, 1180310 - 1180515
Alignment:
| Q |
12 |
gagaagaatgctaatgtttcgtgacaaaagtttggctatcaaaaaatttaggctcaatttgaatggttttgtagttaggtacatgtcaaaggatgttgat |
111 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1180310 |
gagaagaatgctaatgtttcgtgaccaaagtttggctatcaaaaaatttaggctcaatttgaatggttttgtagttaggtacatgtcaaaggatgttgat |
1180409 |
T |
|
| Q |
112 |
aattggttgaaattggcttgtgaatgtggtgttgaggtaatacagtattcccaacagatactggaaggtcaggagcaataccatgtcttgccaatcagtg |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1180410 |
aattggttgaaattggcttgtgaatgtggtgttgaggtaatacagtattcccaacagatactggaaggtcaggagcaataccatgtcttgccaatcagtg |
1180509 |
T |
|
| Q |
212 |
taattg |
217 |
Q |
| |
|
|||||| |
|
|
| T |
1180510 |
taattg |
1180515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 12 - 165
Target Start/End: Original strand, 1196652 - 1196805
Alignment:
| Q |
12 |
gagaagaatgctaatgtttcgtgacaaaagtttggctatcaaaaaatttaggctcaatttgaatggttttgtagttaggtacatgtcaaaggatgttgat |
111 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |||||||| |||||| | || |||| || ||||||||| || |||||||||||||||||||||| |
|
|
| T |
1196652 |
gagaagaatgctaatgtttcgtgaccaaagtttgcctatcaaagaatttaagatcgatttaaacggttttgtacctaagtacatgtcaaaggatgttgat |
1196751 |
T |
|
| Q |
112 |
aattggttgaaattggcttgtgaatgtggtgttgaggtaatacagtattcccaa |
165 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
1196752 |
atttggttgaaattggcttgtgaatgtggtgttgaggtaatagagtattcccaa |
1196805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 146
Target Start/End: Original strand, 5203468 - 5203523
Alignment:
| Q |
91 |
tacatgtcaaaggatgttgataattggttgaaattggcttgtgaatgtggtgttga |
146 |
Q |
| |
|
||||||||||| ||||||||| |||||||||| || || |||||||||||||||| |
|
|
| T |
5203468 |
tacatgtcaaaagatgttgatcattggttgaagttagcaagtgaatgtggtgttga |
5203523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University