View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4044_high_4 (Length: 406)
Name: NF4044_high_4
Description: NF4044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4044_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 11 - 392
Target Start/End: Complemental strand, 40458197 - 40457816
Alignment:
| Q |
11 |
cagagatgtaagtatggtagtagtagcaaagccatattgaagttccgagaaaggtttaaagactaccctcgcaggatgtgggaatggcagcaagctttgt |
110 |
Q |
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| T |
40458197 |
cagagatgtaagtatggtagtagcagcaaagccatattgaagttccgagaaaggtttaaagactaccctcgcaggatgtgggaatggcagcaagctttgt |
40458098 |
T |
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| Q |
111 |
ctcaagtcacctctattgctggatggaattatggaattgagtatgtacaattctattctattctatagaaggctagctgagttggtgtttatttttggta |
210 |
Q |
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| T |
40458097 |
ctcaagtcacctctattgctggatggaattatggaattaagtatgtacaattctattctattctatagaaggctagctgagttggtgtttatttttggta |
40457998 |
T |
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| Q |
211 |
aattttatgtgcatcactttgataggtggtcaatggtaaactaatcttctaaaagatactttacaaagataaaccactgccttctaaaggtagaagctca |
310 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |
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| T |
40457997 |
aattttatgtggatcactttgataggtggtcaatggtaaactaatcttctaaaagatactttacaaagataagccactgccttctaaaagtagaagctca |
40457898 |
T |
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| Q |
311 |
cggttctccccgtcctcttggttgagactatgatttgatcgatgatgatgtacaaataaattaaacaaatataagggaaaag |
392 |
Q |
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| T |
40457897 |
cggttctccccgtcctcttggttgagactatgatttgatcgatgatgatgtaaaaataaattaaacaaatataagggaaaag |
40457816 |
T |
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