View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4044_high_5 (Length: 385)
Name: NF4044_high_5
Description: NF4044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4044_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 319; Significance: 1e-180; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 42198830 - 42198456
Alignment:
| Q |
1 |
ctcaagaaactagagagactattgatgtaccaaaatagattgtctggtgaaattcctgccagtattggacaattttacaaatctctatattcttgcaata |
100 |
Q |
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| T |
42198830 |
ctcaagaaactagagagactattgatgtaccaaaatagattgtctggtgaaatttcagaca-tatttgacaattttacaaatctctatattcttgcaata |
42198732 |
T |
|
| Q |
101 |
ggaaacaaccagttctcgcgaagaattcctgccagtattggacaatgcacgagattgagtattgttgacatggaaatgaataatcttgttggtgccatac |
200 |
Q |
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| T |
42198731 |
ggaaacaaccagttctcgggaagaattcctgccagtattggacaatgcacgagattgagtattgttgacatggaaatgaataatcttgttggtgccatac |
42198632 |
T |
|
| Q |
201 |
caatggagatttttcaattcaatgacttgacaaccttgaacttgcaaggaaactctttgaatggttcgattcctcctgagttaaaaatggagcatctaga |
300 |
Q |
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| T |
42198631 |
caatggagatttttcaattcaatgacttgacaaccttgaacttgcaaggaaactctttgaaaggttcgattcctcctgagttaaaaatggagcatctaga |
42198532 |
T |
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| Q |
301 |
gaccatggttatttcgaacatttggttgtcagggaacattcctaaattagaag----taagcggattgaaaatact |
372 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
42198531 |
gaccatggttatttcgaacaactggttgtcagggaacattcctaaattagaagtaattaagcggattgaaaatact |
42198456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 42211401 - 42211024
Alignment:
| Q |
1 |
ctcaagaaactagagagactattgatgtaccaaaatagattgtctggtgaaattcctgccagtattggacaattttacaaatctctatattcttgcaata |
100 |
Q |
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||||||||| | ||||| |||||||| ||||||||||||||||||||||||||||| | | ||||| |||||||||||||| | |||||| |||||| |
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| T |
42211401 |
ctcaagaaattggagaggctattgatataccaaaatagattgtctggtgaaattccagatatatttgga-aattttacaaatctgtttattctagcaata |
42211303 |
T |
|
| Q |
101 |
ggaaacaaccagttctcgcgaagaattcctgccagtattggacaatgcacgagattgagtattgttgacatggaaatgaataatcttgttggtgccatac |
200 |
Q |
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||||||||||||||||| | ||||||| ||| ||||| |||| ||||| |||||||||| || | ||| || ||||||||| |||| ||||| ||||| |
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| T |
42211302 |
ggaaacaaccagttctcaggtagaattcatgcaagtatcggacgatgcaagagattgagttttctggacttgcgaatgaataagcttgctggtgtcatac |
42211203 |
T |
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| Q |
201 |
caatggagatttttcaattcaatgacttgacaaccttgaacttgcaaggaaactctttgaatggttcgattcctcctgagttaaaaatggagcatctaga |
300 |
Q |
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| ||||||||||||||| || || ||||||||| || |||| || ||||| ||| |||| |||||| |||||||| | || ||||||||||| ||||| |
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| T |
42211202 |
ccatggagatttttcaactctctggcttgacaactttatacttacatggaaattctctgaacggttcgcttcctcctcaattcaaaatggagcagctaga |
42211103 |
T |
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| Q |
301 |
gaccatggttatttcgaacatttggttgtcagggaacattcctaaattagaagtaagcggattgaaaatactgatgatg |
379 |
Q |
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| |||||||| ||||| ||| | |||||||||||||||||||| | ||||| | ||||||||||| ||| |||||| |
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| T |
42211102 |
ggccatggttgtttcggacaacaagctgtcagggaacattcctaaaatcgaagttaacggattgaaaacacttatgatg |
42211024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 29 - 368
Target Start/End: Complemental strand, 42223589 - 42223251
Alignment:
| Q |
29 |
accaaaatagattgtctggtgaaattcctgccagtattggacaattttacaaatctctatattcttgcaataggaaacaaccagttctcgcgaagaattc |
128 |
Q |
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||||||||| |||||||||||||||||| | || |||| | ||||||| ||||||| || ||||| ||||||||||||||||||||| | | ||||| |
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| T |
42223589 |
accaaaataaattgtctggtgaaattccagaca-tatttggcaatttttcaaatctgattactcttggaataggaaacaaccagttctcaggtaaaattc |
42223491 |
T |
|
| Q |
129 |
ctgccagtattggacaatgcacgagattgagtattgttgacatggaaatgaataatcttgttggtgccataccaatggagatttttcaattcaatgactt |
228 |
Q |
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|| ||||| |||||||||| |||||||| | | | ||| || |||||||||| |||||||||| |||||||||||||||||||||| || | ||| |
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| T |
42223490 |
acgcgagtataggacaatgcaagagattgaattatctggacttgcaaatgaataagcttgttggtgtcataccaatggagatttttcaactctctagctt |
42223391 |
T |
|
| Q |
229 |
gacaaccttgaacttgcaaggaaactctttgaatggttcgattcctcctgagttaaaaatggagcatctagagaccatggttatttcgaacatttggttg |
328 |
Q |
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|||||| || |||| || ||||| ||| ||||||||||| |||||||| ||| || |||||||| |||| | |||||||| |||| ||| | || |
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| T |
42223390 |
gacaactttatacttacatggaaattctctgaatggttcgcttcctccttcgttcaagatggagcagctagtggccatggttgtttcagacaacatgctg |
42223291 |
T |
|
| Q |
329 |
tcagggaacattcctaaattagaagtaagcggattgaaaa |
368 |
Q |
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|||||||||||||||||| | ||||| ||||||||||| |
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| T |
42223290 |
tcagggaacattcctaaaatcgaagttgacggattgaaaa |
42223251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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