View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4044_low_11 (Length: 360)
Name: NF4044_low_11
Description: NF4044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4044_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 46920935 - 46920591
Alignment:
| Q |
1 |
cagttttacaatacatatcaaaacaactacacccaacaaacacatcatatatcatcccaccctttaaagcaagaccgtgaatctgtttaccagtcatggg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46920935 |
cagttttacaatacatatcaaaacaactacacccaacaaacacatcatatatcatcccaccctttaaagcaagaccgtgaatctgtttaccagtcatggg |
46920836 |
T |
|
| Q |
101 |
tatctgcaaaagagcagaagctttgaaaacacacggaaaagtgaagtcgttaggttgaacattatcacgacgcatgttggtgaaatggagaagagcaggg |
200 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46920835 |
tatctgcataagagcagaagctttgaaaacacacggaaaagtgaagtcgttaggttgaacattatcacgacgcatgttggtgaaatggagaagagcaggg |
46920736 |
T |
|
| Q |
201 |
agaaaacgacgggtattaacgcaaccagagataagagaggtccaagtaacaacggtgcggaggtgagtgagtgagagaacgtgttgagctgagttaagaa |
300 |
Q |
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|||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
46920735 |
agaaaacgacggttatgaacgcaaccagagataagagaggtccaagtaacaacggtgcggaggtgagtgaatgagagaacgtgttgagctgagttaagaa |
46920636 |
T |
|
| Q |
301 |
ggtcgagtttggagtacatgttgacgaggtggttggagaggaaag |
345 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46920635 |
ggtcgagtttggagtacatgttgacgaggtggttggagaggaaag |
46920591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 38311092 - 38310748
Alignment:
| Q |
1 |
cagttttacaatacatatcaaaacaactacacccaacaaacacatcatatatcatcccaccctttaaagcaagaccgtgaatctgtttaccagtcatggg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38311092 |
cagttttacaatacatatcaaaacaactacacccaacaaacacatcatatatcatcccaccctttaaagcaagaccgtgaatctgtttaccagtcatggg |
38310993 |
T |
|
| Q |
101 |
tatctgcaaaagagcagaagctttgaaaacacacggaaaagtgaagtcgttaggttgaacattatcacgacgcatgttggtgaaatggagaagagcaggg |
200 |
Q |
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|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
38310992 |
tatctgcacaaaagcagaagctttgaaaacacacggaaaagtgaagtcgttaggttgaacattatcacgacgcatgttggtgaaatgaagaagagcaggg |
38310893 |
T |
|
| Q |
201 |
agaaaacgacgggtattaacgcaaccagagataagagaggtccaagtaacaacggtgcggaggtgagtgagtgagagaacgtgttgagctgagttaagaa |
300 |
Q |
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|||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38310892 |
agaaaacgacggttatgaacgcaaccagagataagagaggtccaagtaacaacggtgcggaggtgagtgagtgagagaacgtgttgagctgagttaagaa |
38310793 |
T |
|
| Q |
301 |
ggtcgagtttggagtacatgttgacgaggtggttggagaggaaag |
345 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38310792 |
ggtcgagtttggagtacatgttgacgaggtggttggagaggaaag |
38310748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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