View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4044_low_12 (Length: 354)

Name: NF4044_low_12
Description: NF4044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4044_low_12
NF4044_low_12
[»] chr7 (1 HSPs)
chr7 (20-339)||(17907326-17907664)
[»] chr2 (1 HSPs)
chr2 (226-305)||(31037679-31037758)
[»] chr3 (7 HSPs)
chr3 (242-303)||(47652736-47652797)
chr3 (246-305)||(54257106-54257165)
chr3 (225-302)||(55249341-55249418)
chr3 (100-136)||(41514848-41514884)
chr3 (21-93)||(47652475-47652547)
chr3 (100-153)||(47681465-47681518)
chr3 (42-82)||(54256872-54256912)
[»] chr1 (4 HSPs)
chr1 (244-305)||(35017075-35017136)
chr1 (40-90)||(4931940-4931990)
chr1 (241-287)||(4932147-4932193)
chr1 (225-306)||(40789673-40789754)
[»] chr5 (3 HSPs)
chr5 (40-92)||(35177902-35177954)
chr5 (225-272)||(35178069-35178116)
chr5 (115-208)||(5351525-5351618)


Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 20 - 339
Target Start/End: Original strand, 17907326 - 17907664
Alignment:
Q  20 cggttacctacgccgtggcatttaggggttatataagatcccatctcatcactgattcagcataattttatttcaatacatcatgtgtagttcacatgat 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  17907326 cggttacctacgccgtggcatttaggggttatataagatcccatctcatcaccgattcagcataattttatttcaatacatcatgtgtagttcacatgat 17907425  T
Q  120 atttttaatgttatcattaggcgaaaaaccataagagacagacacttcctctatataagcaaaaaccggtatcaacagtatgcaaaaagtcatcactatt 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17907426 atttttaatgttatcattaggcgaaaaaccataagagacagacacttcctctatataagcaaaaaccggtatcaacagtatgcaaaaagtcatcactatt 17907525  T
Q  220 gtagt-------------------cgtatcggctttcgccgcggttgctctaaatcccgatatgtaatagcggtgtagcagcgctataccagttatttaa 300  Q
    |||||                   |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  17907526 gtagtcgtagcggaaacgcaatagcgtatcggctttcgtcgcggttgctctaaatcccgatatgtaatagcagtgtagcagcgctataccagttatttaa 17907625  T
Q  301 caacatagtaatttaatgtaatgaaagtcgagaacacag 339  Q
    |||||||||||||||||||||||||||||||||||||||    
T  17907626 caacatagtaatttaatgtaatgaaagtcgagaacacag 17907664  T

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Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 226 - 305
Target Start/End: Original strand, 31037679 - 31037758
Alignment:
Q  226 gtatcggctttcgccgcggttgctctaaatcccgatatgtaatagcggtgtagcagcgctataccagttatttaacaaca 305  Q
    ||||| ||||||| ||| ||||||| |||||| |||| ||||||||||| |||| ||||| |||||||||||||||||||    
T  31037679 gtatctgctttcgtcgcagttgctccaaatcctgataggtaatagcggtatagcggcgctttaccagttatttaacaaca 31037758  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 303
Target Start/End: Original strand, 47652736 - 47652797
Alignment:
Q  242 cggttgctctaaatcccgatatgtaatagcggtgtagcagcgctataccagttatttaacaa 303  Q
    ||||||||| ||||||||||||||||||| ||| |||||| |||||||  ||||||||||||    
T  47652736 cggttgctccaaatcccgatatgtaatagtggtatagcagtgctatactggttatttaacaa 47652797  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 246 - 305
Target Start/End: Original strand, 54257106 - 54257165
Alignment:
Q  246 tgctctaaatcccgatatgtaatagcggtgtagcagcgctataccagttatttaacaaca 305  Q
    ||||| |||||| |||||||||||||||| |||||||| ||||||  |||||||||||||    
T  54257106 tgctccaaatcctgatatgtaatagcggtatagcagcgatataccgattatttaacaaca 54257165  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 302
Target Start/End: Complemental strand, 55249418 - 55249341
Alignment:
Q  225 cgtatcggctttcgccgcggttgctctaaatcccgatatgtaatagcggtgtagcagcgctataccagttatttaaca 302  Q
    ||||| |||||||  ||||||||||||| ||||||||| ||||| || || |||| |||||||||| || ||||||||    
T  55249418 cgtattggctttcatcgcggttgctctagatcccgatacgtaatggctgtatagcggcgctataccggtcatttaaca 55249341  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 136
Target Start/End: Original strand, 41514848 - 41514884
Alignment:
Q  100 tcatgtgtagttcacatgatatttttaatgttatcat 136  Q
    ||||||| |||||||||||||||||||||||||||||    
T  41514848 tcatgtgcagttcacatgatatttttaatgttatcat 41514884  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 93
Target Start/End: Original strand, 47652475 - 47652547
Alignment:
Q  21 ggttacctacgccgtggcatttaggggttatataagatcccatctcatcactgattcagcataattttatttc 93  Q
    ||||||||| | |||||  |||||||||||||||||| |||||||||||||  | ||| ||| ||||||||||    
T  47652475 ggttacctaggtcgtggggtttaggggttatataagaccccatctcatcaccaactcaacattattttatttc 47652547  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 153
Target Start/End: Complemental strand, 47681518 - 47681465
Alignment:
Q  100 tcatgtgtagttcacatgatatttttaatgttatcattaggcgaaaaaccataa 153  Q
    ||||||| | ||||||||||||||||| |||||||||||||  ||||| |||||    
T  47681518 tcatgtgcaattcacatgatatttttagtgttatcattagggaaaaaagcataa 47681465  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 82
Target Start/End: Original strand, 54256872 - 54256912
Alignment:
Q  42 taggggttatataagatcccatctcatcactgattcagcat 82  Q
    ||||||||||||| || ||||||||||||| ||||||||||    
T  54256872 taggggttatatacgaccccatctcatcaccgattcagcat 54256912  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 244 - 305
Target Start/End: Original strand, 35017075 - 35017136
Alignment:
Q  244 gttgctctaaatcccgatatgtaatagcggtgtagcagcgctataccagttatttaacaaca 305  Q
    ||||||| |||| |||||||||||||| ||| || | |||||||||||||||||||||||||    
T  35017075 gttgctccaaataccgatatgtaatagtggtataacggcgctataccagttatttaacaaca 35017136  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 90
Target Start/End: Original strand, 4931940 - 4931990
Alignment:
Q  40 tttaggggttatataagatcccatctcatcactgattcagcataattttat 90  Q
    |||||||||||||||||| || |||||||||| || ||||||| |||||||    
T  4931940 tttaggggttatataagacccaatctcatcaccgactcagcattattttat 4931990  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 287
Target Start/End: Original strand, 4932147 - 4932193
Alignment:
Q  241 gcggttgctctaaatcccgatatgtaatagcggtgtagcagcgctat 287  Q
    |||||||||| |||| ||||| |||||||||||| ||||||||||||    
T  4932147 gcggttgctccaaattccgatgtgtaatagcggtatagcagcgctat 4932193  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 306
Target Start/End: Original strand, 40789673 - 40789754
Alignment:
Q  225 cgtatcggctttcgccgcggttgctctaaatcccgatatgtaatagcggtgtagcagcgctataccagttatttaacaacat 306  Q
    ||||| || ||||| ||| ||||||  |||||||||||  |||||||||| |||| ||||  ||||| ||||||||||||||    
T  40789673 cgtatgggatttcgtcgctgttgcttgaaatcccgatacataatagcggtatagcggcgccgtaccaattatttaacaacat 40789754  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 92
Target Start/End: Original strand, 35177902 - 35177954
Alignment:
Q  40 tttaggggttatataagatcccatctcatcactgattcagcataattttattt 92  Q
    |||||| ||||||||||| ||||||||||||| || ||||||| |||||||||    
T  35177902 tttaggagttatataagaccccatctcatcaccgactcagcattattttattt 35177954  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 225 - 272
Target Start/End: Original strand, 35178069 - 35178116
Alignment:
Q  225 cgtatcggctttcgccgcggttgctctaaatcccgatatgtaatagcg 272  Q
    ||||||| |||||| |||||||||||||||||| | ||||||||||||    
T  35178069 cgtatcgactttcgtcgcggttgctctaaatcctggtatgtaatagcg 35178116  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 208
Target Start/End: Complemental strand, 5351618 - 5351525
Alignment:
Q  115 atgatatttttaatgttatcattaggcgaaaaaccataagagacagacacttcctctatataagcaaaaaccggtatcaacagtatgcaaaaag 208  Q
    ||||||||||| || | ||||||||| |||||| ||||| | | ||| |||| | |||| ||||||| ||||| ||||| || |||||||||||    
T  5351618 atgatatttttcatttcatcattaggggaaaaaacataaaaaagagaaactttcgctatttaagcaataaccgctatcatcaatatgcaaaaag 5351525  T

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