View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4044_low_16 (Length: 341)
Name: NF4044_low_16
Description: NF4044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4044_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 331
Target Start/End: Original strand, 3155535 - 3155838
Alignment:
| Q |
18 |
atgcacgactaaacctaccacgtgaaattgacgcatacttgnnnnnnngaaacaaaacgaaaagcaaatctaaataaatgaatgtaaaatggagtggatc |
117 |
Q |
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| T |
3155535 |
atgcacgactaaacctaccacgtgaaattgacgcttacttgtttttttgagacaaaacgaaaagcaaatctaaataaatgaacgtaaaatggagtgga-- |
3155632 |
T |
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| Q |
118 |
taagggtaacgtgtggttgttaaattggttttacttgataaaaaatagatttgctcaatttaaagtgttgataatgtatgatatagtacgagtcnnnnnn |
217 |
Q |
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| T |
3155633 |
--------acgtgtgattgttaaattggttttacttgataaaaaatagatttgctcaagttaaagtgttgataatgtatgatatagtacgagtctttttt |
3155724 |
T |
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| Q |
218 |
nagtttaatcaatatcttacgttagaatttgattagcctatatataattatgcacaaagaatatctaattaacactacaaaaaagtgttaccgatgtgct |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3155725 |
tagtttaatcaatatcttacgttagaatttgattagcctatatataattatgcacaaagaatatctaattaacactacaaaaaagtgttaccgatgtgct |
3155824 |
T |
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| Q |
318 |
atactatgcctatg |
331 |
Q |
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|||||||||||||| |
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| T |
3155825 |
atactatgcctatg |
3155838 |
T |
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