View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4044_low_17 (Length: 325)

Name: NF4044_low_17
Description: NF4044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4044_low_17
NF4044_low_17
[»] chr8 (4 HSPs)
chr8 (84-309)||(1422803-1423029)
chr8 (4-54)||(18550000-18550050)
chr8 (4-54)||(23708997-23709047)
chr8 (4-53)||(1422723-1422772)
[»] scaffold0014 (1 HSPs)
scaffold0014 (4-54)||(145082-145132)
[»] chr3 (2 HSPs)
chr3 (4-54)||(29555838-29555888)
chr3 (1-68)||(44413917-44413985)
[»] chr2 (1 HSPs)
chr2 (4-54)||(12256922-12256972)
[»] chr7 (1 HSPs)
chr7 (1-68)||(41189540-41189608)
[»] chr1 (2 HSPs)
chr1 (1-51)||(3851181-3851232)
chr1 (1-51)||(29359662-29359713)


Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 84 - 309
Target Start/End: Original strand, 1422803 - 1423029
Alignment:
Q  84 aagatcactcgtcataagagcatgaaatgctattttaccgaccacatgtccttaacgacacacactat-gacttttccctactctgaggagcgaaaagat 182  Q
    ||||||||||||||||||||||||||||||||||||||| | ||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  1422803 aagatcactcgtcataagagcatgaaatgctattttaccaatcacatatccttaacaacacacactattgacttttccctactctgaggagcgaaaagat 1422902  T
Q  183 agaaggaacaatataacctaattttttgggtgagaaataggaagaccaattcaacatcacaaaatcatcccataattctctcgagtttgcctttctccac 282  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  1422903 agaaggaataatataacctaattttttgggtgagaaataggaagaccaattcaacatcacaaaatcatcccataattctctcgagtttccttttctccac 1423002  T
Q  283 tgttatactttcttttttattctatct 309  Q
    |||||||||||||||||||||||||||    
T  1423003 tgttatactttcttttttattctatct 1423029  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 18550050 - 18550000
Alignment:
Q  4 aagataatgtgagtatgagaagaaatgttgtacaaaagttataaaaaaatg 54  Q
    |||||||| |||||||||||   |||||||||||||||||||| |||||||    
T  18550050 aagataatatgagtatgagagagaatgttgtacaaaagttatacaaaaatg 18550000  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 23709047 - 23708997
Alignment:
Q  4 aagataatgtgagtatgagaagaaatgttgtacaaaagttataaaaaaatg 54  Q
    ||||||||||||||||||||   || ||||||||||||||||| |||||||    
T  23709047 aagataatgtgagtatgagatagaaggttgtacaaaagttatacaaaaatg 23708997  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 1422723 - 1422772
Alignment:
Q  4 aagataatgtgagtatgagaagaaatgttgtacaaaagttataaaaaaat 53  Q
    |||||||||||||||||| ||  |||||| |||||||||| |||||||||    
T  1422723 aagataatgtgagtatgaaaaagaatgttatacaaaagttgtaaaaaaat 1422772  T

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Target: scaffold0014 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 145132 - 145082
Alignment:
Q  4 aagataatgtgagtatgagaagaaatgttgtacaaaagttataaaaaaatg 54  Q
    ||||||||||||||||||||   ||||||||||||||||| || |||||||    
T  145132 aagataatgtgagtatgagagagaatgttgtacaaaagttgtacaaaaatg 145082  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 29555838 - 29555888
Alignment:
Q  4 aagataatgtgagtatgagaagaaatgttgtacaaaagttataaaaaaatg 54  Q
    ||||||||||||||||||||   || ||||||||||||||||| |||||||    
T  29555838 aagataatgtgagtatgagagagaaggttgtacaaaagttatacaaaaatg 29555888  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 44413917 - 44413985
Alignment:
Q  1 aaaaagataatgtgagtatgaga-agaaatgttgt-acaaaagttataaaaaaatgttgtatatatatca 68  Q
    ||||||||||||||||||||||| ||||| ||||| ||||||||| ||||||| ||||||  ||||||||    
T  44413917 aaaaagataatgtgagtatgagagagaaa-gttgtcacaaaagttgtaaaaaattgttgttcatatatca 44413985  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 12256972 - 12256922
Alignment:
Q  4 aagataatgtgagtatgagaagaaatgttgtacaaaagttataaaaaaatg 54  Q
    ||||||||||||||||||||   || ||||||||||||||||| |||||||    
T  12256972 aagataatgtgagtatgagagagaaggttgtacaaaagttatacaaaaatg 12256922  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 41189540 - 41189608
Alignment:
Q  1 aaaaagataatgtgagtatgagaagaaatgttgt-acaaaagttataaaaaaatgttgtatatatatca 68  Q
    ||||||||||||||||||||||||  || ||||| |||||| ||||||||||  |||||  ||||||||    
T  41189540 aaaaagataatgtgagtatgagaaagaaagttgtcacaaaaattataaaaaatggttgttcatatatca 41189608  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 3851232 - 3851181
Alignment:
Q  1 aaaaagataatgtgagtatgaga-agaaatgttgt-acaaaagttataaaaaa 51  Q
    ||||||||||||||||||||||| ||||| ||||| |||||||||||||||||    
T  3851232 aaaaagataatgtgagtatgagagagaaa-gttgtcacaaaagttataaaaaa 3851181  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 29359713 - 29359662
Alignment:
Q  1 aaaaagataatgtgagtatgaga-agaaatgttg-tacaaaagttataaaaaa 51  Q
    ||||||||||||||||||||||| ||||| |||| ||||||||||||||||||    
T  29359713 aaaaagataatgtgagtatgagagagaaa-gttgttacaaaagttataaaaaa 29359662  T

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