View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4044_low_18 (Length: 321)
Name: NF4044_low_18
Description: NF4044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4044_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 133; Significance: 4e-69; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 173 - 305
Target Start/End: Complemental strand, 2666181 - 2666049
Alignment:
| Q |
173 |
atgttctatttatagtatttcatgagtcatgtatgataaccacgtattcaacttcttgacacgtttacaacacgtgttgccctaagatgatggttacaaa |
272 |
Q |
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| T |
2666181 |
atgttctatttatagtatttcatgagtcatgtatgataaccacgtattcaacttcttgacacgtttacaacacgtgttgccctaagatgatggttacaaa |
2666082 |
T |
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| Q |
273 |
cttgagtgcctttatagtttaagatgaggaatc |
305 |
Q |
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| T |
2666081 |
cttgagtgcctttatagtttaagatgaggaatc |
2666049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 16 - 133
Target Start/End: Complemental strand, 2666339 - 2666222
Alignment:
| Q |
16 |
ctcagttctgcccatggtttcaccagctttgtaactttggtcgtgggatgccatttttctttttcaaattgaattagcaggtttactcgctagaatcttt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
2666339 |
ctcagttctgcccatggtttcaccagctttgtaactttggtcgtgggaagccatttttctttttcaaattgaaatagcaggtttactcgctagaatcttt |
2666240 |
T |
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| Q |
116 |
cctcttatggttatctca |
133 |
Q |
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|||||||||||||||||| |
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| T |
2666239 |
cctcttatggttatctca |
2666222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 2681747 - 2681679
Alignment:
| Q |
16 |
ctcagttctgcccatggtttcaccagctttgtaactttggtcgtgggatgccatttttctttttcaaat |
84 |
Q |
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| T |
2681747 |
ctcagttcggcccatggtttcaccagctttgtagctctgattgtgggatgccatctttcttcttcaaat |
2681679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 249
Target Start/End: Complemental strand, 2675256 - 2675185
Alignment:
| Q |
178 |
ctatttatagtatttcatgagtcatgtatgataaccacgtattcaacttcttgacacgtttacaacacgtgt |
249 |
Q |
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| T |
2675256 |
ctatttatagtgtttcatgagtcgtgtatgataaccacgtgtctaacttcttgacacgtgcacaacatgtgt |
2675185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 249
Target Start/End: Complemental strand, 2681571 - 2681501
Alignment:
| Q |
179 |
tatttatagtatttcatgagtcatgtatgataaccacgtattcaacttcttgacacgtttacaacacgtgt |
249 |
Q |
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| T |
2681571 |
tatttatagtgtttcataggtagtgtatgataaccacgtgtccaacttcttgacacgtccacaacacgtgt |
2681501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 2675436 - 2675368
Alignment:
| Q |
16 |
ctcagttctgcccatggtttcaccagctttgtaactttggtcgtgggatgccatttttctttttcaaat |
84 |
Q |
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| T |
2675436 |
ctcagttcgacccatggtctcaccagctttgaagctctgatcttgggatgccatctttcttcttcaaat |
2675368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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