View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4044_low_24 (Length: 263)
Name: NF4044_low_24
Description: NF4044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4044_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 12 - 245
Target Start/End: Original strand, 49864656 - 49864889
Alignment:
| Q |
12 |
atcatcacgagcagttccgttagcaacttcgtaaaattttcctggatagtatttagcagcttcaccggcagagatggttttaacacctggccatttcact |
111 |
Q |
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| T |
49864656 |
atcatcacgagcagttccgttagcaatttcgtaaaactttcctggatagtatttagcagcttcaccggcagagatggttttaacacctggccatttcact |
49864755 |
T |
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| Q |
112 |
ctaagattagtggcagcaccatcacccttgttgttgtattccaaataagtgcatgtctccttgaaaagatttcccatccatggcatataaccctctggta |
211 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49864756 |
ctaagattagtggcagcaccagcacccttgttgttgtattccaaataagtgcatgtctccttgaaaagatttcccatccatggcatataaccctctggta |
49864855 |
T |
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| Q |
212 |
caaagagaccatcaatgagagaatccacgataac |
245 |
Q |
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||||||| |||||||||||||||||||||||||| |
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| T |
49864856 |
caaagaggccatcaatgagagaatccacgataac |
49864889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 12 - 245
Target Start/End: Original strand, 49870593 - 49870826
Alignment:
| Q |
12 |
atcatcacgagcagttccgttagcaacttcgtaaaattttcctggatagtatttagcagcttcaccggcagagatggttttaacacctggccatttcact |
111 |
Q |
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|||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49870593 |
atcatcacgagcagttgcgttagcaatttcgtaaaactttcctggatagtatttagcagcttcaccggcagagatggttttaacacctggccatttcact |
49870692 |
T |
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| Q |
112 |
ctaagattagtggcagcaccatcacccttgttgttgtattccaaataagtgcatgtctccttgaaaagatttcccatccatggcatataaccctctggta |
211 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
49870693 |
ctaagattagtggcagcaccagcacccttgttgttgtattccaaataagtgcatgtctccttgaaaagatttcccatccatggcatgtaaccctctggta |
49870792 |
T |
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| Q |
212 |
caaagagaccatcaatgagagaatccacgataac |
245 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
49870793 |
caaagagaccatcaatgagagaatccacgataac |
49870826 |
T |
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