View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4044_low_26 (Length: 252)
Name: NF4044_low_26
Description: NF4044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4044_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 16 - 238
Target Start/End: Original strand, 56160249 - 56160486
Alignment:
| Q |
16 |
atgaacaaaacattatatgtgatgccaactaagcatgataat---------gagtgcttgcactactacgatgatgaaatctccagttgtggttgtggtt |
106 |
Q |
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| T |
56160249 |
atgaacaaaacattatatgtgatgccaactaagcatgatattaaagatgttgagtgcttgcactactacgatgatgaaatctccagttgtggttgtggtt |
56160348 |
T |
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| Q |
107 |
ttattgggttcaagaaaagccaagtgtttgattacaatttcgg------catcgatgatggtgattcagaagagctgtttgagataaatatgaagaagga |
200 |
Q |
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| T |
56160349 |
ttattgggttcaagaaaagccaagtatttgattacaatttcggagacgacgacgatgatggtgattcagaagagctgtttgagataaatatgaagaagga |
56160448 |
T |
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| Q |
201 |
aagtagattggattcaataagagaagaagagtggtgtg |
238 |
Q |
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| T |
56160449 |
aagtagattggattcaataagagaagaagagtggtgtg |
56160486 |
T |
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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 38933406 - 38933441
Alignment:
| Q |
20 |
acaaaacattatatgtgatgccaactaagcatgata |
55 |
Q |
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| T |
38933406 |
acaaaacattatatgtgatgccaactaagcatgata |
38933441 |
T |
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