View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4044_low_27 (Length: 246)
Name: NF4044_low_27
Description: NF4044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4044_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 10 - 232
Target Start/End: Original strand, 42198944 - 42199166
Alignment:
| Q |
10 |
gagcagcacagaactgttgtagattgcctcacagatattcaacagaatttggaagttccccagtcaagttgttataattgaccataagaacttgcaactg |
109 |
Q |
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| T |
42198944 |
gagcaacacagaactgttgtagattgcctcacagatattcaacagaatttggaagttccccagtcaagttgttataattgaccataagaacttgcaactg |
42199043 |
T |
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| Q |
110 |
agttgagtttttaagggaatcaaagaactgaaaattcaatgatgtggtggaagtgagatagttataaccaagagtcaaatgagtgaggtttttcaagttg |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42199044 |
agttgagtttttaagggaatcaaagaactgaaaattcaatgatgtggtggaagtgagatagttataaccaagagtcaaatgagtgaggtttttcaagttg |
42199143 |
T |
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| Q |
210 |
ttgtaacctttttatatcattat |
232 |
Q |
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||||||||||||||||||||||| |
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| T |
42199144 |
ttgtaacctttttatatcattat |
42199166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 11 - 212
Target Start/End: Original strand, 42211516 - 42211717
Alignment:
| Q |
11 |
agcagcacagaactgttgtagattgcctcacagatattcaacagaatttggaagttccccagtcaagttgttataattgaccataagaacttgcaactga |
110 |
Q |
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|||| |||| |||||||||||||||| | | ||||| ||||| ||| ||||||||||||| ||||||||||||| ||||| |||||||| ||||||||| |
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| T |
42211516 |
agcaacacaaaactgttgtagattgcttgaaagataatcaaccgaacttggaagttccccggtcaagttgttatcattgatcataagaatctgcaactga |
42211615 |
T |
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| Q |
111 |
gttgagtttttaagggaatcaaagaactgaaaattcaatgatgtggtggaagtgagatagttataaccaagagtcaaatgagtgaggtttttcaagttgt |
210 |
Q |
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||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
42211616 |
gttgagtttcgaagggattcaaagaactgaaaattcaatgatgtgttggaagtgagatagtttttaccaagagtcaaatgagtgaggtttttcaagttgt |
42211715 |
T |
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| Q |
211 |
tg |
212 |
Q |
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|| |
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| T |
42211716 |
tg |
42211717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 11 - 212
Target Start/End: Original strand, 42223732 - 42223933
Alignment:
| Q |
11 |
agcagcacagaactgttgtagattgcctcacagatattcaacagaatttggaagttccccagtcaagttgttataattgaccataagaacttgcaactga |
110 |
Q |
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|||| |||| |||||||||||||||| | | ||||| ||||| ||| ||||||||||||| ||||||||||||| |||||||||||||| ||| |||||| |
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| T |
42223732 |
agcaacacaaaactgttgtagattgcttgaaagataatcaaccgaacttggaagttccccggtcaagttgttatcattgaccataagaatttgtaactga |
42223831 |
T |
|
| Q |
111 |
gttgagtttttaagggaatcaaagaactgaaaattcaatgatgtggtggaagtgagatagttataaccaagagtcaaatgagtgaggtttttcaagttgt |
210 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| || | || ||| |||||||||||||||||||||||||| |
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| T |
42223832 |
gttgagtttcgaagggaatcaaagaactgaaaattcaatgatgtagtggaagtgagattattcttactgagatacaaatgagtgaggtttttcaagttgt |
42223931 |
T |
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| Q |
211 |
tg |
212 |
Q |
| |
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|| |
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| T |
42223932 |
tg |
42223933 |
T |
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