View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4044_low_30 (Length: 225)
Name: NF4044_low_30
Description: NF4044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4044_low_30 |
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Alignment Details
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 15 - 211
Target Start/End: Complemental strand, 34860054 - 34859858
Alignment:
| Q |
15 |
cataggatctattgtctcttatgtgtaggtgcatatctgaaactcaccagatgtgtgttactccaacggagttcatacgtaggaagctagatgtttttgg |
114 |
Q |
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| T |
34860054 |
cataggatctattgtcgcttatgtgtaggtgcatatctgaaactcaccagatgtgtgttactccaacggagttcatacgtaggaagctagatgtttttga |
34859955 |
T |
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| Q |
115 |
agatccttattgctcgtcttctgtgtttcttctttaatttacaaagtcctggaaaagtagaagatggaagccacttcaataacacaaatgttgaagg |
211 |
Q |
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| T |
34859954 |
agatccttattgctcgtcttctgtgtttcttctttaatttacaaagtcctggaaaagtagaagatggaagccacttcaataacacaaatgttgaagg |
34859858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 136 - 211
Target Start/End: Complemental strand, 23133073 - 23132995
Alignment:
| Q |
136 |
tgtgtttcttctttaatttac---aaagtcctggaaaagtagaagatggaagccacttcaataacacaaatgttgaagg |
211 |
Q |
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|||||||||| |||| ||||| |||||| || ||||||||||||||||||| |||||||| |||||| ||||||||| |
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| T |
23133073 |
tgtgtttcttgtttattttaccgaaaagtcgtgcaaaagtagaagatggaagctacttcaattacacaattgttgaagg |
23132995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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